Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14936g00003 ATGGAACTTCAGTTAGGTCTTGCTCTCCCCACTCACAACTCCGCCGAGGAATTCAAGCTCAGCAAGTCCAAACAAATAGTGAGTTCAGAGTTATGGAGACCCAGTTGCGGTTCTGAAAGTGGAAAGCATGTCAAACACAAGCGCAACTTTGAAGAGTCCTTTGAACGTTTTCTGAAACCTTTCCCTTTACTAGTATGGAGTGGGCAGCCAAATGAAGAAGATGACCGTAGTCAAAAAGTGAGAAGAAACATTCACACACCCAACGAGAACCGTAGTGAAGAAAACCATTTGGTGGGGTGGCCACCAGTTAAGTCATGGAGGAGGAAAGAACTTCATCAGCATCAACCTGCAAGAGGCCAAATCAGGAACGATAGGATTCAAGCTAACGGGAATCAAAGTAGAGGACCAAACTCTTTATATGTCAAAGTTAACATGGAAGGGGTAACCATAGGAAGGAAAATCAATCTGAGGCTTTTCAACTCGTATAAAACACTTACAAACGCCTTGATCAACATGTTTGCTAAATACCAAAAATTGGAGGAGGCTGGAGAAAGTTACACACTCACCTTTCGAAACGAGCAAGGAGATTGGCTGCAAGTAGGACATGTTCCATGGCAATCATTTATTGATACAGTGCGGCGTTTGGTGCTACTGAAGAATGGAAGTGAAACTATTTGA 678 0.4322 MELQLGLALPTHNSAEEFKLSKSKQIVSSELWRPSCGSESGKHVKHKRNFEESFERFLKPFPLLVWSGQPNEEDDRSQKVRRNIHTPNENRSEENHLVGWPPVKSWRRKELHQHQPARGQIRNDRIQANGNQSRGPNSLYVKVNMEGVTIGRKINLRLFNSYKTLTNALINMFAKYQKLEEAGESYTLTFRNEQGDWLQVGHVPWQSFIDTVRRLVLLKNGSETI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14936g00003 225 Gene3D - 134 224 - -
Vium14936g00003 225 Pfam AUX/IAA family 183 223 IPR033389 -
Vium14936g00003 225 Pfam AUX/IAA family 2 177 IPR033389 -
Vium14936g00003 225 ProSiteProfiles PB1 domain profile. 138 225 IPR000270 GO:0005515
Vium14936g00003 225 Coils Coil 162 182 - -
Vium14936g00003 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 220 IPR003311 GO:0005634|GO:0006355
Vium14936g00003 225 MobiDBLite consensus disorder prediction 120 138 - -
Vium14936g00003 225 MobiDBLite consensus disorder prediction 108 138 - -
Vium14936g00003 225 SUPERFAMILY CAD & PB1 domains 133 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14936g00003 Vium-Chr14936 29484 30834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14936g00003 141 217 B3 DNA Binding Superfamily AT3G61830 29.870 1.10e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vium14936g00003 AUX_IAA 4.2e-27 CL0072