Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14929g00001 ATGTATAGTCAAGTGAATCGTGGTTCTCATATCGGGCAGAGTCCCGTCCCTCCGGTGCTGCCGCCTCCACCACCACCGCCTCAGTATCAGCAGGCTCCGCCGCATTTCCATCAGTTCCCACCCCCTAACGTTGGTGGTCCTCCTCCTCCACCGCCTAACGTTGGTGGTCTACCACCACCACCACCACCCCCTCATCATGTTTATTTAAATGGACCTCCCCCTCCTCCTCCTCCACCGCGTCCTAATTCTTCTTCCCCAATTCCCATGAACCTTCCCGTTCAAGGTTCACATAATGTGATGCCAAATGCTGGACAATCCTACCCTATCCCTTCTCAATTACACCAGGGGAACACCGTGACACCGCAAACATCTTGGGCTCCAGGACCACCGCCTAGAGTATTGCCACCTCCACCACCACCTCCACCTCATCCTCCCTCGGCTTCCCAAGGTCAAATTTTGTATAACCCTTCTTTCCATGGTCCACCTCTGCATCCCGGTGATGTTCAGAATCTGCATAATGCTCCTCCACCACCACCCCATTCAACAGGTTATTTCCATTCAGCTGTTGGGAATTACCGAGTGCCTCCTGGTATTCCCCCACCGTTGCCATTGTCTCCACCACCTGCTCTTCCCGCTCCACCGCCTCCTCCTCTTAATGCTCCGGTAACCTCCTCCTCCTCCTCAAATGTTGCAGATGACCCTAAATCTGTGAAGACTGTGGATTTGGTTGATGGAGTTGTAGCTTTTCTTCCATCTGGTATTGCACCTGTACATGGTTCTGATTCTAAACGGGACGGTCCAAATTGTAGAGAGGTTGCTGATGCTGAAAAAGATGAGGATCTTCCCCCACCTAAGCCAACGGAAGAAAATACTGTACTGAAGATAGAAGCTTTGTGTCAGCTTATTGCTGAGAAGGGAGCTGATTTTGAAGATAAGATTCGTCGAGATGAATTCCAAAATCCTGAATATGTATTTTTGTTTGGCGGAGACCCAGGAACTGAGGCTGCAATTTCTAACACTTATTTCCTGTGGATGAAGAAGAAATATAATTTAGATACTGGATGGCATGAAAAGAAAAGGCAACCAGAGAGATTGTACTCTTCAGGTGAGCAGTATAACCTGCATGTTGCAACTGGGAGTGCTGATTCTGACATGGAAATGGAAGATGATATCACACTTTCTGACAAGGACCAAGGTTCAAACTTTGCAACTGAAGCCCTAAATCGAGATGATGAAGTGCATAGAGTGAATCAGAATCTAGCGCAGGTGCAGAAATTATCAGAGAATGACCCTGACAGGGTCATCTCATCCTGCAGTCCATCATACTTTGGATCCATGGGAGTCAGCAAACAGAATGAAGGACCCGAGATTTTATCTGATCTGGAGCACAGGAAATCTGTAAGACCAGTTACCAAGGTTCCAAGTCTTGAGAATGACTCCACTGAAGTGGCTGAGTTATCCTTGGGCAAGGCTTTGGAGGAAGCTGCAACTTGTGTTGATGATGATTTTGTTTGTACTGTTCCTTCTGATCACAATAAAACCGCTACTACTAATAGGGATTATGGGACACTCCTAGCGAGTGGCAGCCCTATAAGACTTCTTCAAGATTATGCTTCTGATGACACTTCAGCTAATGGGGATGAAAGCAATGCTGCAGATGCTAACTTTTTCACATTCTCAGAAGGTGTTGATACTGGTGTTTCAGCAGTCCATAAAGATTCTGGGAGTCATATGGAGATTGGTATTGGATCTAAGAGTCCCGCCAGTACTCAAAAGGGGTTTGGGTCACTCTCCAGAACATCACAGGGTGGTTTAGAAATATCTACACATTTATTACAAGAGTCTAAGAAAACTCGCAACCGAAAAAAATCTGTCTCACGTTGGAGTAGTGATGGACGTGTTGACCATAACCTTGAAAATCAGATGTCTGTTAATTTTGCTTCATCGGTGGAAGCTTCCAAGGGCAAAGATAGATTAGAGGATACTGCCATTAACAGTGGTAGTAGAAGTGGTAATGCTGAAAAGGAAGATGAGGGGAAAACCTCAAAATTTGAACTAAATGTTATGAAAGTAGATGAATTCGGAAGACAACTAAGAGAAGGTCTTTCAGATAGTGATTCTGATGATTCATTCCATCACCGGACACGGAGGCTTAATAAAAGAGATAGAAGAAGCTGGAGCCGCAGCCAGTCTCCTCCAGACAGGAGGAGTAGGAGGAATAGGAGGAGTCCTCGGAGGAGAAGAGATAAAAGAAATAGGTCTCGCAGCTGGTCACCCCAGCACCGAAGAAGCAGTAGGTCACCGATCTCAAGACGGTCAGGTGACTTTCGTGGTGAGAATGTTAAAAGGGACAAGGATAAGTGCTTTGACTTTCTTCGAGGAAAGTGCTATCGGGGAGCATCTTGCAGGTACATTCACCATGAATCTGACATGAATGCTACTTCAAGGCGCTATAAGAATAAACATTATCTTGAAGTCAGTTATTGTGGAAAAGAATCAAAGACTAATGGAGACATGACGAATATTTCTTCTAAAGTGTTTGATAATGAGCATGATGGAGTTAGAAGTCAGGATGATGATCTTAGCCTGAATGTGACTAGCCAGGAAGTAGTGCAGAAAAAAGAAGATTCAGGGAGGAATGTTGTTGCATCAACTATCATTCATCTTGATGGCCAATCAGTTAATAGCAATCTAGGTAAATCTAAATCTATCAGAGAGGTTGCTCCTGAAATGCAGGAAACCATTGATGTGAGGGAGGATCCAAGGAATTCAATCCATGGGAATGATAGTTCGGAAGCAGGTGATTCTCAACAGCAACACATAGTTGAAGGCTTTCACCCTGATGCTTTAGGCCATGATAATACTTCTAAATCATCTGGTACATATAAAGATGTCATTCCCTCAGGAGATGGTCTTTTTGCTCAGAAAATGCAACTCAGTGTTTCTGCTGCTGGAATTCAGGAACAATCGTGTTATCCATCTCAGCATGTAAATGCATCCTATGTGACTGATGCATCACCTGATAAAAGATCAACTGTTTCTACTAGTGTTACTGAAGTTCCTGACAGTGTCACATCAGAGCAGGCTTCAAAAGAGTTACCTCCACAGTGTGACTCTTCAGTGGAATTTCCACGTCATAATTACCAGGTGTCTGCACCTGTTGTTTCACATTCCCCTGGCGAAAATCCTGCGCACATGCCACAAATTTCAAGGCAGTATAATGTGATGCATCAAAGGGCATTCTTTCCTTTCCAATCCACTGCCAGAGAAAAGTTTGAACCTTACCCAGCTCCTTTACACATGCAGAATGCTCACTTCAATGTACCACCTAATAGCTCTTGGACATCATTGCCATTGCCACCACCACTGCCACCACTGCCACCGCCACCATCACTGCCACCGCCTCCATCAACAATGGTGTATGATCCCAATGTAAACTCAGGAGTTGTAAAATCATATATTTCTTCTGAATTTATTCAGAGTCAAATGCATTCAAGAACTGACTTTGTTTCCCAGACTTCCATGAAGCCTTTACCGAGTTGCTCTGAGAATTCTGATTTTCATGATAAAGCATACCCTCCTATGCAGGACCATTCACGGACTTTTATGCTTACTGAACCTTTCTCTCCAAAGCAACTTCCTCAAGGGAACCCAGCTAGTCAATTACTTTCAGGATCTAGTCTCAACGGAGATGAATTTCATAATCAACTTCCATTGCAGGATTCAAAATTTTCCAGTGCCACATCATTTGGCAGCTTGCAGCCTCAACAAAATCAATTTTCCTGGAAATCGGATGTGAACAGACTACAACCTTCTCTGGGTGGCAAGTTACCTGCCGAAGGACATTTTATGACATCCTCACACATTGATTCATCATCACAAAAACAACAATCAATGTACAATTTTCAGTGTTCTGTATCCGAGGCTAATTTGGGTGTGCCTGGGGAGACTGCTACTGTTTCCAGATATCCACCTGATTTTCTGGATAGCAGTCATTCAACTTCTCTTCCACCATTTAGTGGATCAAGAATATCTGCTCACTATAATCCTTATGCATCAACCTTTGAGAAACCACTAAGTTCCAAATTTAGTTCAAGTATTTTTAGACAGGAAAGTGAAATAGTCCATGGTAACAATTATGCTTCTTCTAGATTGAACCATACTACGGTAAATGGGGAGGGTGATGGTGGGGTTGGATCAAGACATTCGGCATCTGCACCAAAATCGGGTAGAGCTCTTGGTCAGATTTTGCCTAGGTCTGGTGGTGACCAATATGATCCACTTTTTGACAGCATTGAACCATCATCTTCTTTGAGAAAAACTGATTTTGATCAGAAGCAGGAAGTCACAGGTGAATCCAATGTCAGCCTAAGGCCCAAAAGTTCTTACATTTCTTTGGATGTGGATGAGAAAAACAAGGAGGAGGAGGTTGGGGCTGTTGCCTCTACCACTTCTCAAAATAATGATGAGTACAGTGAGACAGCGGATGCAGAAGTTGGTGCTATTGAAAATGAGAGCGTAAGTGATGATGTGGATGTTGCAAAAGTGACTACAAAGGAGGTTGATATTAATCGGGTCAAGTCTCCTGGAAAAAGAAAAAAGAGTAAGGATTCCAGATCAATGAAATTGTTCAAAGTTTCCATTGCGAACTTTGTAAAGGAGGTTTTGAAACCATCATGGCGACAAGGTAATATGAGTAAGGTTGCTTTTAAAACCATTGTGAAAAAGACCGTGGATAAAGTGTCAGGAGCCATGAAAGGCCACCGTGTACCTAAGTCCCAAGCGAAGATAAGTCAATATATTGATTCATCGCAGCGAAAGTTGACTAAACTTGTGATGGGTTATGTTGACAAGTATGTGAAGGTATGA 4869 0.4368 MYSQVNRGSHIGQSPVPPVLPPPPPPPQYQQAPPHFHQFPPPNVGGPPPPPPNVGGLPPPPPPPHHVYLNGPPPPPPPPRPNSSSPIPMNLPVQGSHNVMPNAGQSYPIPSQLHQGNTVTPQTSWAPGPPPRVLPPPPPPPPHPPSASQGQILYNPSFHGPPLHPGDVQNLHNAPPPPPHSTGYFHSAVGNYRVPPGIPPPLPLSPPPALPAPPPPPLNAPVTSSSSSNVADDPKSVKTVDLVDGVVAFLPSGIAPVHGSDSKRDGPNCREVADAEKDEDLPPPKPTEENTVLKIEALCQLIAEKGADFEDKIRRDEFQNPEYVFLFGGDPGTEAAISNTYFLWMKKKYNLDTGWHEKKRQPERLYSSGEQYNLHVATGSADSDMEMEDDITLSDKDQGSNFATEALNRDDEVHRVNQNLAQVQKLSENDPDRVISSCSPSYFGSMGVSKQNEGPEILSDLEHRKSVRPVTKVPSLENDSTEVAELSLGKALEEAATCVDDDFVCTVPSDHNKTATTNRDYGTLLASGSPIRLLQDYASDDTSANGDESNAADANFFTFSEGVDTGVSAVHKDSGSHMEIGIGSKSPASTQKGFGSLSRTSQGGLEISTHLLQESKKTRNRKKSVSRWSSDGRVDHNLENQMSVNFASSVEASKGKDRLEDTAINSGSRSGNAEKEDEGKTSKFELNVMKVDEFGRQLREGLSDSDSDDSFHHRTRRLNKRDRRSWSRSQSPPDRRSRRNRRSPRRRRDKRNRSRSWSPQHRRSSRSPISRRSGDFRGENVKRDKDKCFDFLRGKCYRGASCRYIHHESDMNATSRRYKNKHYLEVSYCGKESKTNGDMTNISSKVFDNEHDGVRSQDDDLSLNVTSQEVVQKKEDSGRNVVASTIIHLDGQSVNSNLGKSKSIREVAPEMQETIDVREDPRNSIHGNDSSEAGDSQQQHIVEGFHPDALGHDNTSKSSGTYKDVIPSGDGLFAQKMQLSVSAAGIQEQSCYPSQHVNASYVTDASPDKRSTVSTSVTEVPDSVTSEQASKELPPQCDSSVEFPRHNYQVSAPVVSHSPGENPAHMPQISRQYNVMHQRAFFPFQSTAREKFEPYPAPLHMQNAHFNVPPNSSWTSLPLPPPLPPLPPPPSLPPPPSTMVYDPNVNSGVVKSYISSEFIQSQMHSRTDFVSQTSMKPLPSCSENSDFHDKAYPPMQDHSRTFMLTEPFSPKQLPQGNPASQLLSGSSLNGDEFHNQLPLQDSKFSSATSFGSLQPQQNQFSWKSDVNRLQPSLGGKLPAEGHFMTSSHIDSSSQKQQSMYNFQCSVSEANLGVPGETATVSRYPPDFLDSSHSTSLPPFSGSRISAHYNPYASTFEKPLSSKFSSSIFRQESEIVHGNNYASSRLNHTTVNGEGDGGVGSRHSASAPKSGRALGQILPRSGGDQYDPLFDSIEPSSSLRKTDFDQKQEVTGESNVSLRPKSSYISLDVDEKNKEEEVGAVASTTSQNNDEYSETADAEVGAIENESVSDDVDVAKVTTKEVDINRVKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKV 1622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14929g00001 1622 ProSiteProfiles Zinc finger C3H1-type profile. 782 809 IPR000571 GO:0046872
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 263 285 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 1003 1035 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 194 221 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 254 288 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 1 236 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 124 147 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 700 715 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 15 86 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 87 123 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 700 778 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 1207 1236 - -
Vium14929g00001 1622 SUPERFAMILY Surp module (SWAP domain) 275 348 IPR035967 GO:0003723|GO:0006396
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 912 937 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 583 601 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 738 760 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 648 684 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 614 634 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 578 601 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 1385 1496 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 1003 1038 - -
Vium14929g00001 1622 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 305 1621 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 912 926 - -
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 614 636 - -
Vium14929g00001 1622 Gene3D Surp module 294 350 IPR035967 GO:0003723|GO:0006396
Vium14929g00001 1622 MobiDBLite consensus disorder prediction 1478 1493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14929g00001 Vium-Chr14929 1673 12888 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium14929g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14929g00001 - - vum:124822814 2863.17