Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14922g00005 ATGGGAGGTGACGCAACAACAACTGAGAGTGCCACATCGGAGTTGAACGCCGCGGAAGTCAACATCAATATTCGTTGTTCAAATGGCTCAAAGTTTTCTGTTCAGATTAGTCTCGATTCCGTGGTCAGATCTTTCAAAGACGTCGTGGCTCGCAGCTGTGACATCCCCGCTGATCAACAGCGTCTGATTTACAAGGGTCGGATCCTTAAGGATGATCAGACACTCCAAAGCTACGGTTTGGAGGCTGATCACACTGTCCATTTGGTTCGTGGCTTTGCTCCTAACAACAACACTGGTGGGGCTAATAGTGGTGGTGCCAATACCACCACAGCCAATACCACGAGAGGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCAGGATTTGGGGCTTCACTCTTTCCTGGACTTAGTGGTAACAATGGGATGGGGGGCAGTGGCCTCAATGGCTTATTTGGAGCGGGCTTTCCGGACCTTGAACAAATGCAGCAACCGTTTTTGTCAAACCCCAATTTAGTGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCAGAGATAGTGCGGAATCTTATAATGAATAATCCGCAGATGCAAGAGTTAATGGATAGAAACCCTGAGCTGGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACAAGGAAACCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATCGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGTAATGCCGGAAATGACGGTGCAGCGGCTAGGAACCAATCAACTAATCCCTCCACTGCTAATTCTGAAGCAACTTCCCCTGTACCCAATACGAACCCACTTCCTAATCCATGGTCCTCTACTGGAACTGGAGGTGGTCAAAATAACACCAGAAGGTCAACTCCTGCTGGTGGGGATGCTCGACAGCAGGCACCCACTGGATTAGGAGGGCTTGGACTGCCTGATCTTGAAGGCATGTTGGGTGGAATGCCGGATGCTGCTATGTTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGGGTCAATTCTGAGCAGCGTGGCATGCCTGATATAAATTCTCTAAGGGAGGTTATGCAAAACCCAGAGTTTTTACGACTGTTTTCCTCACCCGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGATTGGTCAGCAACAATCAACACAGTAA 1350 0.4696 MGGDATTTESATSELNAAEVNINIRCSNGSKFSVQISLDSVVRSFKDVVARSCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPNNNTGGANSGGANTTTANTTRGAGANEGGGLGGPGFGASLFPGLSGNNGMGGSGLNGLFGAGFPDLEQMQQPFLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRKPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDGAAARNQSTNPSTANSEATSPVPNTNPLPNPWSSTGTGGGQNNTRRSTPAGGDARQQAPTGLGGLGLPDLEGMLGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNSEQRGMPDINSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQIGQQQSTQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14922g00005 449 SUPERFAMILY Ubiquitin-like 13 103 IPR029071 -
Vium14922g00005 449 Gene3D - 7 104 - -
Vium14922g00005 449 FunFam Ubiquitin domain-containing protein DSK2b 17 103 - -
Vium14922g00005 449 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
Vium14922g00005 449 SMART ubq_7 20 91 IPR000626 GO:0005515
Vium14922g00005 449 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Vium14922g00005 449 FunFam Ubiquitin domain-containing protein DSK2b 197 253 - -
Vium14922g00005 449 CDD Ubl_Dsk2p_like 20 92 - -
Vium14922g00005 449 MobiDBLite consensus disorder prediction 96 123 - -
Vium14922g00005 449 SMART CBM 200 239 IPR006636 -
Vium14922g00005 449 SMART CBM 146 187 IPR006636 -
Vium14922g00005 449 SMART CBM 351 393 IPR006636 -
Vium14922g00005 449 SMART CBM 396 431 IPR006636 -
Vium14922g00005 449 MobiDBLite consensus disorder prediction 96 117 - -
Vium14922g00005 449 Gene3D - 195 253 - -
Vium14922g00005 449 MobiDBLite consensus disorder prediction 275 338 - -
Vium14922g00005 449 PANTHER UBIQUILIN 16 445 IPR015496 -
Vium14922g00005 449 MobiDBLite consensus disorder prediction 275 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14922g00005 Vium-Chr14922 12446 15715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14922g00005 20 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 5.55e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14922g00005 K04523 - gmx:100797539 676.011