Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14921g00001 ATGGATCACACAATTTTCATATGGAATGTATGGAGCAGAAATGAGAAGAAAGCGTGTATGCTAAACTTCCACAATGCTGCAGTCAAAGATGTGAAATGGTCTCCGCAAGGCCACTTTCTACTTTCTTGTGGATATGATTGCACGACAAGATTGGTCGACGTTGAAAAGGGATTGGAGACTCAGGTTTTCAGAGAAGATCAAATTGTTGCAGTTATAAAGTTCCATCCAGACAATTCAAATATCTTCCTTTCTGGAGGTTCAAATGGCCATATCAAATTGTGGGATGTCAGAACGGGCAAAGTAGTTCATAATTATAATCGAAATTTAGGTCCAATTCTCGATCTTGAGTTCACAATGAATGGGAAGCAATTCATTTCTTCTTGTGATGTATCTCAAAGTAATATCAGTGAGAACGCTATTATTGTTTGGGATGTTTCAAGGGAGGTACCATTGTCTAACCAGGTGATAGCAGTAATGCAGCAAAGAAGCATGATTTTCACTGGTTTATGCAGAAGCTTATACATGTCCTTGCGTGAGGCTGCACCCATTTGA 552 0.3931 MDHTIFIWNVWSRNEKKACMLNFHNAAVKDVKWSPQGHFLLSCGYDCTTRLVDVEKGLETQVFREDQIVAVIKFHPDNSNIFLSGGSNGHIKLWDVRTGKVVHNYNRNLGPILDLEFTMNGKQFISSCDVSQSNISENAIIVWDVSREVPLSNQVIAVMQQRSMIFTGLCRSLYMSLREAAPI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14921g00001 183 ProSiteProfiles Trp-Asp (WD) repeats profile. 21 62 IPR001680 GO:0005515
Vium14921g00001 183 SMART WD40_4 98 144 IPR001680 GO:0005515
Vium14921g00001 183 SMART WD40_4 56 95 IPR001680 GO:0005515
Vium14921g00001 183 SMART WD40_4 14 53 IPR001680 GO:0005515
Vium14921g00001 183 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 104 IPR001680 GO:0005515
Vium14921g00001 183 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 155 - -
Vium14921g00001 183 Gene3D - 1 169 IPR015943 GO:0005515
Vium14921g00001 183 Pfam Eukaryotic translation initiation factor eIF2A 13 146 IPR013979 -
Vium14921g00001 183 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 100 - -
Vium14921g00001 183 SUPERFAMILY WD40 repeat-like 2 162 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14921g00001 Vium-Chr14921 1915 6639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14921g00001 2 147 U-box Gene Family AT2G33340 27.333 1.81e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14921g00001 K24742 - gmx:100790592 296.204