Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1491g00019 ATGGAGTTGGCTTTGAGCTTAGGCCACACAAACAACGCTTCAATGGGGTTTTCCGTGGCACTGTCTCACGACACAAGAGCTTCCTCAGATCCACCCCTTCAGCTCCACCACCTTCTTCCTTCAACACCGGTTCTTCCTTCTCCACGCCTTCCCATTCCATGGCTCTCCCATGCATTAGGCATGGAAGACACACCGGTGAGGGCGCTTGATGACACGGACGACGGTGCTGCAGTTTCGTCCCCCAACAACAGTGCAGTGTCGTCTTTTTGCAGAAACAGTAGAAAGTTTTTTGAGGGTGACAGCGAAGAAGACGAAAACGGGTCAACAAGGAAGAAACTCAGACTCTCCAAAACACAATCAGCTTTTCTAGAAGACAGCTTCAAAGAACACACCACTCTCAATCCCAAACAGAAACTCGTTCTTGCAAAAGAGTTAAATCTGCGTCCCCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGAACAAAGTTGAAGCAGACAGAGGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAGTCTGTCAGAAGAGAATAAGAGGTTACAGAAGGAACTGCAAGAACTGAGGGCTTTGAAAACTTGTGAACCGTTTTTCATGCAACTTCCGGCTACCACCCTCACCATGTGTCCCTCCTGTGAACGCGTCGCCACCACCACCTCCGCCGCTGCTTCCGCCAACAACAATGATCGTGTTTCTCTGAACAAGCCCAGAATATTGTCAGGCCCACACGAAGCAGGCCCACATGGCCCATCGGAGTGTTTCTTCTGA 792 0.5 MELALSLGHTNNASMGFSVALSHDTRASSDPPLQLHHLLPSTPVLPSPRLPIPWLSHALGMEDTPVRALDDTDDGAAVSSPNNSAVSSFCRNSRKFFEGDSEEDENGSTRKKLRLSKTQSAFLEDSFKEHTTLNPKQKLVLAKELNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLSEENKRLQKELQELRALKTCEPFFMQLPATTLTMCPSCERVATTTSAAASANNNDRVSLNKPRILSGPHEAGPHGPSECFF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1491g00019 263 CDD homeodomain 110 167 IPR001356 GO:0003677
Vium1491g00019 263 MobiDBLite consensus disorder prediction 231 263 - -
Vium1491g00019 263 SMART HOX_1 108 170 IPR001356 GO:0003677
Vium1491g00019 263 SUPERFAMILY Homeodomain-like 104 167 IPR009057 -
Vium1491g00019 263 Gene3D - 114 164 - -
Vium1491g00019 263 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677
Vium1491g00019 263 CDD bZIP 159 198 - -
Vium1491g00019 263 Pfam Homeodomain 110 164 IPR001356 GO:0003677
Vium1491g00019 263 Pfam Homeobox associated leucine zipper 166 200 IPR003106 GO:0006355|GO:0043565
Vium1491g00019 263 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 21 236 - -
Vium1491g00019 263 Coils Coil 172 199 - -
Vium1491g00019 263 SMART halz 166 209 IPR003106 GO:0006355|GO:0043565
Vium1491g00019 263 FunFam Homeobox-leucine zipper protein HAT22 114 160 - -
Vium1491g00019 263 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1491g00019 Vium-Chr1491 115606 116848 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1491g00019 100 255 Homeobox Transcription Factor Family AT4G37790 61.146 5.95e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vium1491g00019 Homeodomain 1.3e-14 CL0123