Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1491g00007 ATGGCTCCTGGGAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCATCTGATGTCTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAGAGTAATAGTACATCTACAAAATCTAGTATTGGGTTGAATGGAAAAAACGGAGTTAGTTCAAATAATGGGGTGTACGAATTACTTGGATGCTCTGTTTGCAAGAACTTAATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACATTATGTTGCCATTGTAAAGTTGAAGTCCACAATATCTGCCCATCTTGCCATCATGAACTTGGAAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCAGAATCGTTGGAACTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATATTCCCTTACTATACTAAGCTCAAGCACGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCTTATGCTGGATCTGAGTGCTCAGTGATGGGTGACATTCCAACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCACCGATATGTCAAAGCAAATCCTCATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTTAATAGTTTTGGAAGGCATTTCTGCTTGCACTTTGAGGCATTTCAGCTTGGCTCAGCTCCAGTATATATGGCTTTTTTGCGATTTATGGGTGATGACTATGAAGCAAAGAAATTCAGCTACAGCTTAGAAGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGGATTCCAAGGAGCATTCGTGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTTGCGCTTTATTTTTCTGGTGGAGAAAGACAGGAGTTAAAGTTGAGAATCAGTGGGCGTATATGGAGAGAAGATTGA 930 0.4065 MAPGSSVFKEVLESHLMSSDYETGKAKSEAKSNSTSTKSSIGLNGKNGVSSNNGVYELLGCSVCKNLMYPPIHQCPNGHTLCCHCKVEVHNICPSCHHELGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDYEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRISGRIWRED 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1491g00007 309 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Vium1491g00007 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Vium1491g00007 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 112 - -
Vium1491g00007 309 SUPERFAMILY TRAF domain-like 114 305 - -
Vium1491g00007 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Vium1491g00007 309 MobiDBLite consensus disorder prediction 20 43 - -
Vium1491g00007 309 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vium1491g00007 309 MobiDBLite consensus disorder prediction 28 43 - -
Vium1491g00007 309 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Vium1491g00007 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 168 IPR013083 -
Vium1491g00007 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 29 307 - -
Vium1491g00007 309 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1491g00007 Vium-Chr1491 59807 64001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1491g00007 1 309 C3H Transcription Factor Family AT2G41980 78.641 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1491g00007 K04506 - gmx:100500061 630.943