Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1491g00006 ATGGTACTGATGCTGCTATTAAGAAGCTGGATAACAGTTCTTCCCCAGAACCTGACTCCGATTTCGGCACTCAGACTGAAGCATGACAACTTTGTTGAGTTGATTGGATATTGTCTAGAGGCAGAAAACAGAATTTTGGTATACCAACATGCAAGCCTTGGTTCTTTGCATGACGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAGCCTGGTCCAGTTCTAAGTTGGAACCAAAGAGCCAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGACCAAGATAGCAGATTTTAGCTTGACAAATCAGTCTTCTGACACAGCCGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCGGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGTGTTGTGCTATTAGAACTCTTGACTGGAAGAAAACCAGTAGATCACACAATGCCGAAAGGACAACAGAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGCGAGGACAAAGTGAAACAATGTGTTGATCCTAAGCTAAACAACGAGTATCCGCCAAAGGCTATTGCCAAGTTGGCAGCAGTGGCAGCGCTTTGTGTTCAGTATGAAGCTGATTTCAGACCAAACATGACGATTGTGGTGAAAGCTCTTCAGCCACTTCTCAATGCAAAACCGCCTGGTCCTGAAACTCAAGCTTGA 804 0.4453 MVLMLLLRSWITVLPQNLTPISALRLKHDNFVELIGYCLEAENRILVYQHASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYETKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPETQA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1491g00006 267 SUPERFAMILY Protein kinase-like (PK-like) 24 252 IPR011009 -
Vium1491g00006 267 Pfam Protein tyrosine and serine/threonine kinase 25 252 IPR001245 GO:0004672|GO:0006468
Vium1491g00006 267 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1491g00006 267 Gene3D Transferase(Phosphotransferase) domain 1 52 261 - -
Vium1491g00006 267 FunFam PTI1-like tyrosine-protein kinase 3 52 261 - -
Vium1491g00006 267 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 24 260 - -
Vium1491g00006 267 ProSitePatterns Tyrosine protein kinases specific active-site signature. 102 114 IPR008266 GO:0004672|GO:0006468
Vium1491g00006 267 SMART tyrkin_6 1 252 IPR020635 GO:0004713|GO:0006468
Vium1491g00006 267 Gene3D Phosphorylase Kinase; domain 1 17 51 - -
Vium1491g00006 267 PIRSF ILK 18 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1491g00006 Vium-Chr1491 55576 57188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1491g00006 25 259 Receptor kinase-like Gene Family AT3G58690 49.153 2.26e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vium1491g00006 PK_Tyr_Ser-Thr 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1491g00006 - - gmx:100786291 462.611