Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1491g00004 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGCCCCCCCTGCAAGCCAATACACTGCACCACCTAGGGGTAGCACATACGGCGGAGGAGGAGGAAGTGGTAGAGGAGAGCCTAGGGGTGTTGCAAGGAGTGCCCCACAGAAAGTGTTGCCGATTGAGATACCCTCTATTCCATTGGAAGAGTTAAATAGGTTAACAGGAAACTTTGGTACAAAGGCTTTCATCGGCGAAGGTTCCTACGGACGGGTTTACTATGCAAAATTGAGTGATGGTACTGATGCTGCTATTAAGAAGCTGGATAACAGTTCTTCCCCAGAACCTGACTCCGATTTCGGCACTCAGTTATCGGTTGTCTCAAGACTGAAGCATGACAACTTTGTTGAGTTGATTGGATATTGTCTAGAGGCAGAAAACAGAATTTTGGTATACCAACATGCAAGCCTTGGTTCTTTGCATGACGTGTTACATGGAAGGAAGGGTGTACAAGGGGCTGAGCCTGGTCCAGTTCTAAGTTGGAACCAAAGAGCCAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCCAGCAATGTCTTACTGTTCAATGACTATGAGACCAAGATAGCAGATTTTAGCTTGACAAATCAGTCTTCTGACACAGCCGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCGGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGTGATGTTTACAGTTTTGGTGTTGTGCTATTAGAACTCTTGACTGGAAGAAAACCAGTAGATCACACAATGCCGAAAGGACAACAGAGTCTTGTAACTTGGGCAACTCCAAGGCTGAGCGAGGACAAAGTGAAACAATGTGTTGATCCTAAGCTAAACAACGAGTATCCGCCAAAGGCTATTGCCAAGTTGGCAGCAGTGGCAGCGCTTTGTGTTCAGTATGAAGCTGATTTCAGACCAAACATGACGATTGTGGTGAAAGCTCTTCAGCCACTTCTCAATGCAAAACCGCCTGGTCCTGAAACTCAAGCTTGA 1092 0.4643 MLCCGGAEEESSAPPASQYTAPPRGSTYGGGGGSGRGEPRGVARSAPQKVLPIEIPSIPLEELNRLTGNFGTKAFIGEGSYGRVYYAKLSDGTDAAIKKLDNSSSPEPDSDFGTQLSVVSRLKHDNFVELIGYCLEAENRILVYQHASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYETKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPETQA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1491g00004 363 ProSitePatterns Tyrosine protein kinases specific active-site signature. 198 210 IPR008266 GO:0004672|GO:0006468
Vium1491g00004 363 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vium1491g00004 363 PIRSF ILK 35 355 - -
Vium1491g00004 363 Gene3D Transferase(Phosphotransferase) domain 1 148 357 - -
Vium1491g00004 363 MobiDBLite consensus disorder prediction 1 48 - -
Vium1491g00004 363 Pfam Protein tyrosine and serine/threonine kinase 74 348 IPR001245 GO:0004672|GO:0006468
Vium1491g00004 363 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 23 356 - -
Vium1491g00004 363 SMART tyrkin_6 70 348 IPR020635 GO:0004713|GO:0006468
Vium1491g00004 363 FunFam PTI1-like tyrosine-protein kinase 3 148 357 - -
Vium1491g00004 363 SUPERFAMILY Protein kinase-like (PK-like) 47 348 IPR011009 -
Vium1491g00004 363 Gene3D Phosphorylase Kinase; domain 1 43 146 - -
Vium1491g00004 363 ProSiteProfiles Protein kinase domain profile. 70 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1491g00004 363 FunFam probable protein kinase At2g41970 43 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1491g00004 Vium-Chr1491 55576 58359 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1491g00004 1 349 Receptor kinase-like Gene Family AT4G02010 42.898 3.57e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vium1491g00004 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1491g00004 - - gmx:100786291 649.432