Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14897g00002 ATGGTGAAGTTCAACTTGGTCATGATTTGCTTTTCTGCCATGTTATATGCCGTTACTGCATTGAACACTGATGGGGTGGCTCTTCTGTCACTCCAAAAGCATTGGACATTTGTTCCTCCTTCCATAAACTTGAGTTGGAATGCTTCTGATTCCACTCCATGCTCTTGGTTAGGAGTCCAGTGTGACAATAACCATAGTGCAATCTATCTTAACCTCTCTGGAAACTCAATTTCAGGTCTTTTGGGACCTGAAATAGGACACTTGAGTCACTTGCAAACACTTGACTTGTCCTCAAACAACTTCTCAGGGAACATACCTCCTGAGTTAGGAAATTGTACTCTGCTTCAGAACCTGGACCTTTCTTATAACAGTATCACAGGAAACATACCTGATAGTTTGAGAAACTTGCAGAATTTAGTGTCTTTCAGTAGTATGTACAATGGGATAACTGGTCAAATTCCTGAGTTCTTGTTTCAACTTCAACACTTGGAAGATCTTCTCCTGAACCAAAACTCTTTGTCTGGTCCCATTCCAATGAATGTTGGGAATGGTACAGAAATTGTGACACTGTATCTGGATCGTAATCAGTTGTCAGGAATGATTCCGCCGTCCATTGCAAACTGCAGTAAATTAGTGGAGCTGTATTTGGACTATAACCAGTTTCATGGAGTTCTACCTGATAGTATTAACAATCTTCAAAGTGTTGTTAAGTTGAGTTTCAGTAATAATAGACTTGAGGGTACCATTCCCTTATTGGGATCTAGCACATGTAAAACTTTACAATATTTGGACCTGTCAGTAAACAAATTTAGTGGAGGCATACCTTCAACCTTGGGGAATTGCAGTGGATTGACAGAAATTTATGCTTTAAACACAAGTTTAGGAGGAAGCATTCCATCCTCCTTAGGCCAATTAACACAACTTTCTGTTCTTCGCCTTGAAACCAATCATTTGTCTGGTCAAATACCTTCAGAAATTGGTAATTGTAGGTCATTAAAATACTTGATGTTGAATAACAATGAACTTGAGGGAGAGATTCCAAGTGAATTAGGAAAGCTAAGTCAGTTGCAAGATCTTAGACTTCATTTCAACAATTTGACAGGTGGAATTCCAGTGAGCATTTGGAAAATTTCCAGCCTTCAGCAACTGCATGTGTATTACAATAACCTTTCTGGTGAGGTGCCTTTAGAATTGGCAGAACTCAAACAACTGAGAAAACTTGGCATATACCACAATCAGTTCTCTGGAGTCATTCCTCAAAACTTAGGAATCAATAGCAGTTTAGTGGAGATGGATCTCTCATATAATCTTTTCACTGGAAACATCCCAGCTAATCTATGCTTTGGACAACAATTACTTAGGCTAGTCCTGGCTTCAAATCAATTGCAAGGTGGTATTCCTCCTGACATGGGAAGATGCACCACACTTACTAGGTTAAGGCTTGATGGAAACAACTTAAGTGGACCCTTACCTGATTTTACAAGCAATTGTAGTCTCACCTACATGGACTTCAGTGGGAACAATATCAATGGAACAATTCCATCAAGTTTGGGAAACTGCAAAAATCTTACTACTGTTATTTTATCTCACAACAATCTTTCTGGGATCATACCCTTTGGGCTAGGAAACCTTGTGAACCTTCAAAGGTTGAACCTTTCTCAAAACAAATTAGAAGGTCCTTTACCACATGAGCTGTCAAACTGTAAGAAAATGCAGTACTTTGATGCTGGATTCAATTCTCTAAATGGTTCATTCCCGTCTAGTTTGAGAACTTGGACAGGGTTGGCAACATTGAATTTAAGGGACAATCATTTCACTGGGGGTATCCCAACTTTCTTATCAGAATTTGAAGGCCTTTATGATCTACATCTTGGGGGAAATGTTTTTGGAGGCCAAATTCCTAGATCAATTGGTGGGTTGAAAAATCTTTTTTATGAGTTGAATCTAAGTGCTAATGGGCTGACTGGTGAAATTCCTCCTGAGATTGGAAAACTGACATTGCTGCAAAGCCTGGATATTTCTCTCAACAATCTGACTGGAAAAATTGAAGTTCTTGAAGATCTCACTTCATTGATTGAACTCAATATTTCATACAATTCTTTTTCTGGTCCTCTTCCAGACACACTGGTGAACTTGCTCCATTCTTCTTCCTCATCATTCTTGGGAGTTCCTGGCTTATGTGTTAGATGTTTTCCATCAAATTGTTCCAAAAGTAGCAGCTTGAAGCCATGTGATGAGAACAACACTACACATCGAAAAGGGCTGAGTAAAATTAAAGTTATGTTGATAGCAGTTGGATCTGCACTACTGATATCAATTCTGTTACTTGGTCTTGTTTACCTGATATACTACAAGCAAGATGTGAAGATTTTTCCCGAACAGCGATCATCAACTTTGCTCAAGAAGGTGATGAAGGTCACAGAGAACCTAAATGATAGGCATATTATTGGGAGAGGAGCTCATGGAGTTATTTACAAAGTTGAATTCAGTCTGGACAAGGTTTTTGTCATAAAGAAATTTCCCTTTAAAGATAACAAAAAACTGATTACTAGCATGAACGCAGAGATTGAAACCACTGGGAAGATAAGGCATAGAAATCTAGTGAGAATAAAAAACTTCTGGTTAAGAAAGGACTTTGGTCTAATCATGTACAAGTACATGGAAAATGGAAGTCTTCATGATCTTCTGCATGAGAAGTTTCCACCACCAACTTTAGAGTGGAATGTTCGCTGTACAATTGCAGTTGGAATTGCACATGGACTTGAATACCTCCATCATGATTGTGACCCTTTCATAGTGCACAGAGACATCAAACCAAAGAATATACTATTGAATTCTGATATGGTGCCTCGTATTGCTGATTTTGGCATTGCAAGACTTCTATATCATTCCTCTTATTCATTGCAATCTTTATCTGTTCCTGGTACAGTAGGGTACATTGCACCAGAGAATGCTTATTCAACAGTGATGAGTAGGAAGAGTGATGTGTATAGTTATGGAGTGCTTTTGCTAGAGCTGATATGCAGAAAGAAGGTGCTAGATGATCCTTCATTTGTAGAAGGAAAAGATCTTGTGGGGTGGGTTAGATGTATATGGGAAAAAACAAAAGGCATTGATGGAATTGTTGACTCAGGGCTTGAAGAGGAACTTTTGGATTCAAATTTGAGGGAACAAGTTGAACAAGTGCTCTTGATGGCATTGAGATGTACTGATAAGAATCCAGGTGAGAGACCAACAATGAGAGAAGTGGTCAAGGAGCTGATAGTTAGATGCAAAGATATTGACATGAAGAAGAGTAAATGTTGA 3306 0.3872 MVKFNLVMICFSAMLYAVTALNTDGVALLSLQKHWTFVPPSINLSWNASDSTPCSWLGVQCDNNHSAIYLNLSGNSISGLLGPEIGHLSHLQTLDLSSNNFSGNIPPELGNCTLLQNLDLSYNSITGNIPDSLRNLQNLVSFSSMYNGITGQIPEFLFQLQHLEDLLLNQNSLSGPIPMNVGNGTEIVTLYLDRNQLSGMIPPSIANCSKLVELYLDYNQFHGVLPDSINNLQSVVKLSFSNNRLEGTIPLLGSSTCKTLQYLDLSVNKFSGGIPSTLGNCSGLTEIYALNTSLGGSIPSSLGQLTQLSVLRLETNHLSGQIPSEIGNCRSLKYLMLNNNELEGEIPSELGKLSQLQDLRLHFNNLTGGIPVSIWKISSLQQLHVYYNNLSGEVPLELAELKQLRKLGIYHNQFSGVIPQNLGINSSLVEMDLSYNLFTGNIPANLCFGQQLLRLVLASNQLQGGIPPDMGRCTTLTRLRLDGNNLSGPLPDFTSNCSLTYMDFSGNNINGTIPSSLGNCKNLTTVILSHNNLSGIIPFGLGNLVNLQRLNLSQNKLEGPLPHELSNCKKMQYFDAGFNSLNGSFPSSLRTWTGLATLNLRDNHFTGGIPTFLSEFEGLYDLHLGGNVFGGQIPRSIGGLKNLFYELNLSANGLTGEIPPEIGKLTLLQSLDISLNNLTGKIEVLEDLTSLIELNISYNSFSGPLPDTLVNLLHSSSSSFLGVPGLCVRCFPSNCSKSSSLKPCDENNTTHRKGLSKIKVMLIAVGSALLISILLLGLVYLIYYKQDVKIFPEQRSSTLLKKVMKVTENLNDRHIIGRGAHGVIYKVEFSLDKVFVIKKFPFKDNKKLITSMNAEIETTGKIRHRNLVRIKNFWLRKDFGLIMYKYMENGSLHDLLHEKFPPPTLEWNVRCTIAVGIAHGLEYLHHDCDPFIVHRDIKPKNILLNSDMVPRIADFGIARLLYHSSYSLQSLSVPGTVGYIAPENAYSTVMSRKSDVYSYGVLLLELICRKKVLDDPSFVEGKDLVGWVRCIWEKTKGIDGIVDSGLEEELLDSNLREQVEQVLLMALRCTDKNPGERPTMREVVKELIVRCKDIDMKKSKC 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14897g00002 1101 FunFam Leucine-rich repeat receptor protein kinase EMS1 255 348 - -
Vium14897g00002 1101 SMART serkin_6 810 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14897g00002 1101 SUPERFAMILY L domain-like 36 197 - -
Vium14897g00002 1101 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 349 446 - -
Vium14897g00002 1101 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Vium14897g00002 1101 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 450 736 - -
Vium14897g00002 1101 SUPERFAMILY RNI-like 146 463 - -
Vium14897g00002 1101 Gene3D Ribonuclease Inhibitor 254 424 IPR032675 -
Vium14897g00002 1101 Gene3D Transferase(Phosphotransferase) domain 1 887 1099 - -
Vium14897g00002 1101 Pfam Leucine Rich repeat 87 103 IPR001611 GO:0005515
Vium14897g00002 1101 Pfam Protein kinase domain 813 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14897g00002 1101 Gene3D Ribonuclease Inhibitor 644 719 IPR032675 -
Vium14897g00002 1101 Gene3D Ribonuclease Inhibitor 182 253 IPR032675 -
Vium14897g00002 1101 Gene3D Ribonuclease Inhibitor 425 495 IPR032675 -
Vium14897g00002 1101 ProSiteProfiles Protein kinase domain profile. 810 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14897g00002 1101 SUPERFAMILY L domain-like 473 727 - -
Vium14897g00002 1101 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 497 1087 - -
Vium14897g00002 1101 Pfam Leucine Rich Repeat 115 136 IPR001611 GO:0005515
Vium14897g00002 1101 Gene3D Ribonuclease Inhibitor 568 643 IPR032675 -
Vium14897g00002 1101 Gene3D Ribonuclease Inhibitor 496 567 IPR032675 -
Vium14897g00002 1101 Gene3D Ribonuclease Inhibitor 21 181 IPR032675 -
Vium14897g00002 1101 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 887 1100 - -
Vium14897g00002 1101 Coils Coil 668 688 - -
Vium14897g00002 1101 SUPERFAMILY Protein kinase-like (PK-like) 794 1088 IPR011009 -
Vium14897g00002 1101 Gene3D Phosphorylase Kinase; domain 1 782 886 - -
Vium14897g00002 1101 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Vium14897g00002 1101 ProSitePatterns Protein kinases ATP-binding region signature. 816 843 IPR017441 GO:0005524
Vium14897g00002 1101 SMART LRR_typ_2 640 665 IPR003591 -
Vium14897g00002 1101 SMART LRR_typ_2 88 112 IPR003591 -
Vium14897g00002 1101 SMART LRR_typ_2 305 329 IPR003591 -
Vium14897g00002 1101 SMART LRR_typ_2 160 184 IPR003591 -
Vium14897g00002 1101 SMART LRR_typ_2 208 231 IPR003591 -
Vium14897g00002 1101 SMART LRR_typ_2 401 425 IPR003591 -
Vium14897g00002 1101 SMART LRR_typ_2 353 377 IPR003591 -
Vium14897g00002 1101 SMART LRR_typ_2 688 711 IPR003591 -
Vium14897g00002 1101 SMART LRR_typ_2 544 568 IPR003591 -
Vium14897g00002 1101 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 57 254 - -
Vium14897g00002 1101 Pfam Leucine rich repeat 522 581 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14897g00002 Vium-Chr14897 22088 25867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14897g00002 12 1087 Receptor kinase-like Gene Family AT1G73080 49.725 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium14897g00002 Pkinase 8.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14897g00002 - - qsu:112010432 1265.37