LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium14887g00003	ATGAAAATAACAAATAATAAAGGGTTGTTGTTGGAAGGAGGAAGAAAGTGTACTCCACCGCCGTTTTTGCTCAAGACCTACATGCTTGTCGAGGATCCGGCTACCGACAACGTTGTCTCGTGGAATGTCGACGGGACGGCGTTCGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTCCCGACATTCTTCAAGCACAGCAACTTCTCCAGCTTTGTGCGCCAACTAAATACTTATGGTTTTCGTAAAGTTGCAACAAGTAGATGGGAGTTTTTCAATGAGAGGTTCAAGAAAGGTGAAAGAGAACAGCTAAATGAGATTCAGAGAAGAAAAGCTTGGAGTAACAAGCAACAAGGAAATGGAGGAAATCAAGTGACAGCTCATGATTCTGATGAAGATCAAAGGTCATCATCAACTTCATCTTCTTGTGGGTACAGTACTCTGGTGGATGAAAACAAGAGGCTTAAGAAAGAGAATGGAGTGTTGAACTCTGAGCTAACGAGCATGAAAAGAAAGTGCAAAGAGCTGGTTGATTTGGTGGCCAAATATTCATCACATGCACAAGAGAAGGAAGAAGATGAAAGGCCAATGCTGTTTGGAGTGAGGTTAGAGGTTGAAGGAGGGAGGGAGATTAAGAGGAATAGAGCTGAGATGAGTGAAAGCGCAAGCATTATGCTGTCTCAGTCATGCAAATAG	699	0.4421	MKITNNKGLLLEGGRKCTPPPFLLKTYMLVEDPATDNVVSWNVDGTAFVVWQPAEFARDLLPTFFKHSNFSSFVRQLNTYGFRKVATSRWEFFNERFKKGEREQLNEIQRRKAWSNKQQGNGGNQVTAHDSDEDQRSSSTSSSCGYSTLVDENKRLKKENGVLNSELTSMKRKCKELVDLVAKYSSHAQEKEEDERPMLFGVRLEVEGGREIKRNRAEMSESASIMLSQSCK	232

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium14887g00003	232	MobiDBLite	consensus disorder prediction	113	146	-	-
	Vium14887g00003	232	Coils	Coil	153	173	-	-
	Vium14887g00003	232	ProSitePatterns	HSF-type DNA-binding domain signature.	61	85	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium14887g00003	232	SMART	hsfneu3	18	111	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium14887g00003	232	Gene3D	-	14	112	IPR036388	-
	Vium14887g00003	232	Pfam	HSF-type DNA-binding	22	111	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium14887g00003	232	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	18	189	IPR027725	-
	Vium14887g00003	232	PRINTS	Heat shock factor (HSF) domain signature	73	85	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium14887g00003	232	PRINTS	Heat shock factor (HSF) domain signature	60	72	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium14887g00003	232	PRINTS	Heat shock factor (HSF) domain signature	22	45	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vium14887g00003	232	SUPERFAMILY	"Winged helix" DNA-binding domain	18	111	IPR036390	-
	Vium14887g00003	232	MobiDBLite	consensus disorder prediction	113	128	-	-
	Vium14887g00003	232	FunFam	Heat stress transcription factor B-4	14	112	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium14887g00003	Vium-Chr14887	11913	14401	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium14887g00003	19	205	HSF	AT2G41690	53.623	4.52e-70	213

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vium14887g00003		HSF_DNA-bind	6.5e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium14887g00003	K09419		-	gmx:100786140	372.089