Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14884g00004 ATGGGACAGCCATTGTTTGACAATACTCATACTCACAGTTATGTACTGAATATTTATTTGCAGGCACACAATTTATCTAAGGATCACAAGCCTGATCTTGAGGCTGAGAAAGACAGGATTCTAAAAGCTGGTGGTTTCATCCAAGTTGGACGGGTCAATGGAAGTTTAAACTTGGCTAGAGCAATTGGAGATATGGAGTTCAAGCAGAATAAGTATTTGCCTGCCGAAAAGCAGATCGTGACTGCTGATCCGGACGTAACTTCAGTTGAACTTTGTGATGATGACGAATTCCTTGTGATAGCCTGTGATGGAATATGGGATTGCATGTCTAGCCAACAGCTTGTGGACTTTATACATCAACAGTTAAAGACAGAGAATAAACTTTCTGCGGTTTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACCGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAAACCTTCCAGCCCTGATGTTTCTGTCACGAACGAGCCCCAATCGTCTGCTCAACCACCTGAAACCGATAAAAGTTCAGAGAAAAAAGTAGAATCGAAGTGA 582 0.421 MGQPLFDNTHTHSYVLNIYLQAHNLSKDHKPDLEAEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQNKYLPAEKQIVTADPDVTSVELCDDDEFLVIACDGIWDCMSSQQLVDFIHQQLKTENKLSAVCEKVFDRCLAPTAGGEGCDNMTMILIQFKKPSSPDVSVTNEPQSSAQPPETDKSSEKKVESK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14884g00004 193 PANTHER PROTEIN PHOSPHATASE 2C 22 158 IPR015655 GO:0004722|GO:0006470
Vium14884g00004 193 SMART PP2C_4 1 157 IPR001932 -
Vium14884g00004 193 MobiDBLite consensus disorder prediction 163 181 - -
Vium14884g00004 193 SUPERFAMILY PP2C-like 21 161 IPR036457 -
Vium14884g00004 193 Gene3D - 14 191 IPR036457 -
Vium14884g00004 193 CDD PP2Cc 14 159 IPR001932 -
Vium14884g00004 193 ProSiteProfiles PPM-type phosphatase domain profile. 1 159 IPR001932 -
Vium14884g00004 193 MobiDBLite consensus disorder prediction 163 193 - -
Vium14884g00004 193 Pfam Protein phosphatase 2C 22 144 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14884g00004 Vium-Chr14884 20815 23048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14884g00004 15 176 PP2C-type Phosphatase Gene Family AT2G25070 73.620 2.25e-86 256