Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14884g00001 ATGGGGATATATCTCAGCGCTCCCAAAACAGAGAAGGCCTCTGAAGATGGCGAGAACGACAAGCTGCGGTTTGGTTTGTCTTCCATGCAGGGTTGGCGGGCTTCCATGGAAGATGCTCATGCAGCTATCCCATATTTGGACGAGTCTACATCTTACTTTGGCGTTTATGATGGCCATGGAGGCAAAGCAGTTTCTAAATTCTGTGCCAAGTATCTACACCAGCAGGTGCTGAAGAGTGAATCTTACCGAGCTGGAGATATAAGCACATCATTACAAAAATCTTTTCTTAGAATGGATGAGATGATGCGTGGACAAAGAGGGTGGAGGGAATTAGCTGTCTTGGGGGATAAAATAGAAAAGTTATCTGGTATGTTAGAAGGCTTTATTTGGTCTCCCAGGGGCAGTGAAGCAAATGAGAATGTCGATGATTGGGCATTTGAGGAGGGACCCCATTCTGATTTTACCGGACCAAACTCTGGAAGCACAGCTTGTGTAGCTGTTATCCGAGGAAACAAACTTGTTGTTGGTAATGCTGGAGATTCTAGATGCGTCTTGTCAAGGAAAGGCCAGGCACACAATTTATCTAAGGATCACAAGCCTGATCTTGAGGCTGAGAAAGACAGGATTCTAAAAGCTGGTGGTTTCATCCAAGTTGGACGGGTCAATGGAAGTTTAAACTTGGCTAGAGCAATTGGAGATATGGAGTTCAAGCAGAATAAGTATTTGCCTGCCGAAAAGCAGATCGTGACTGCTGATCCGGACGTAACTTCAGTTGAACTTTGTGATGATGACGAATTCCTTGTGATAGCCTGTGATGGAATATGGGATTGCATGTCTAGCCAACAGCTTGTGGACTTTATACATCAACAGTTAAAGACAGAGAATAAACTTTCTGCGGTTTGTGAGAAAGTATTTGATAGGTGCTTGGCACCAACCGCTGGTGGTGAGGGATGTGATAACATGACCATGATCTTGATTCAGTTCAAAAAACCTTCCAGCCCTGATGTTTCTGTCACGAACGAGCCCCAATCGTCTGCTCAACCACCTGAAACCGATAAAAGTTCAGAGAAAAAAGTAGAATCGAAGTGA 1089 0.4444 MGIYLSAPKTEKASEDGENDKLRFGLSSMQGWRASMEDAHAAIPYLDESTSYFGVYDGHGGKAVSKFCAKYLHQQVLKSESYRAGDISTSLQKSFLRMDEMMRGQRGWRELAVLGDKIEKLSGMLEGFIWSPRGSEANENVDDWAFEEGPHSDFTGPNSGSTACVAVIRGNKLVVGNAGDSRCVLSRKGQAHNLSKDHKPDLEAEKDRILKAGGFIQVGRVNGSLNLARAIGDMEFKQNKYLPAEKQIVTADPDVTSVELCDDDEFLVIACDGIWDCMSSQQLVDFIHQQLKTENKLSAVCEKVFDRCLAPTAGGEGCDNMTMILIQFKKPSSPDVSVTNEPQSSAQPPETDKSSEKKVESK 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14884g00001 362 Gene3D - 1 329 IPR036457 -
Vium14884g00001 362 CDD PP2Cc 23 328 IPR001932 -
Vium14884g00001 362 MobiDBLite consensus disorder prediction 332 350 - -
Vium14884g00001 362 MobiDBLite consensus disorder prediction 332 362 - -
Vium14884g00001 362 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vium14884g00001 362 PANTHER PROTEIN PHOSPHATASE 2C 17 327 IPR015655 GO:0004722|GO:0006470
Vium14884g00001 362 Pfam Protein phosphatase 2C 155 313 IPR001932 -
Vium14884g00001 362 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Vium14884g00001 362 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Vium14884g00001 362 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Vium14884g00001 362 SMART PP2C_4 13 326 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14884g00001 Vium-Chr14884 10637 18860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14884g00001 1 345 PP2C-type Phosphatase Gene Family AT2G25070 74.566 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14884g00001 K17499 - gmx:100776787 682.559