Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14840g00021 ATGTTGTTTGATGAATCAAAATTCATAGGTTGGTTGATAGCTACGATGGCTTCTCTAACTTTTCCTTTTCCTTATTCGTACGTTGTTCTGCTGATTGTTCTCCTCTTTCTCTCATCTTTGTTCACTGCTACTTCTTCAAACTGTGGTGGTTCTAGTGTGAACTTAACCTCCTCTCTAAACAGCAAAGATTCAACGACAGCATGGAATTCACCTTCTGGCCACTTTGCCTTTGGTTTCGAATCAGTTCTATACGACAACAAGGAGTTCATGTCCGTGCTTGCAGTTTGGTTTGCCAAAGACCCCAACAAAACCATGGTTTGGTATGCAAAGCCAGGAAAAGAAAAAACTCATCTTTTTCCGTTAGGATCAACAGTGAATCTCACAAGCAAAGGAATTGTCGTGTATGATCCAAAGGGTCATGACATGTTGTGGCAACGTCCAGAAAACAACACTGATTCTTTAGTATCATGTGCTTTTGTGCTAGACAATGGAAGTTTTGAGCTTGTGGATGATGATGGGAAGAGGGTTTGGGAGAGCTTTGAGGAGCCCACAGATACTATTTTGCCTGGTCAGAATCTGTCTAGGCCTAGAAGCTTCAGAGCACGCCAATCTGACACGAGTTTTGATGATGGGAATTTTGAACTCAGTTGGCAGGGTGATAGCAATTTGGTTCTTTACCATTCTCCAAAATCAAGCAACGATGATGCTGAAAGCTCTCAGTCTCCAACACACGACGCTTACTGGGCCACTGGAACTGTCGGAACTGAATCACAGCTTTTCTTTGATGAGTCTGGACACATGTACATAAAAAATGGCACGGGCACAGTGATCAGAGATATCACAAATGGTGGATCTGATGAGTTCTTTTACATGGCTAGAATTGACCCTGATGGGGTTTTCAGACTATATCGGCACCCAAAAGATGAGAACAAAGCTGTGGCTAATAGTTGCAGTTCAACGTGGTGGAGTGTGGAGCAAAAGCATCCAGATGATATTTGCCTTTCCTTCACGAAGCAAACTGGGAATGTTATCTGTGGTTTTAACAGCTACTGTGTTAGCAGCGGTGAGAGGACTAATTGTGAGTGCCCGGAGCATTATTCTCCTTTCGAACATGACAATCTCATAGGTTGTAGACCAGATTTTCCACTGCCCAGTTGCAACAGAGACGGGTGGGAGCAGAATAAGGATCTTGTAGATTTCAACGAGTATCCCAATTTGGACTGGCCTCTCTCAGATTATGATAAGTTTGAAACTGGAATGGACAAGGATTTGTGCAAACAAAGGTGCCTTGAAGATTGCTTTTGTGCTGTGGCCATATATGGTGATGGAAGCTGTTGGAAGAAGAAGTATCCAATGAGCAATGGAAGGAAGCACGCGAATGTGACTAGAATAGCTTTTGTCAAGGTGCCTAAAACAGATTTAAACAATGATGAAAAAGAACAGACTACACTTGTGATTGTCATATCAATACTCCTTGGAAGCTCAGTGTTCATCAATGTCCTTCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAGGCTTTTGAACAGTCAGAACCTGTCAGTTGGTACAGTCAGTCACTTTACCTACAAGGAGCTTGAAGAAGCAACCACAGGGTTCAAACAAATGTTGGGTCGAGGTGCTTTTGGAAAAGTTTATAAAGGGGTGTTGAGATCAAACGCAAGCAGGTATGTTGCTGTGAAGAGGCTAGACAAGGTTGTGCAAGAAGGTGAGAAGGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGAAACTTGGTTCGTCTGTTTGGTTATTGTGATGAAGGGGAGCATCGTCTTTTGGTGTATGAGTACATGAGCAATGGTTCATTGGCTGGTTTTCTCTTTGGGATCTCAAGGCCTCATTGGAACCAAAGAGTGCAAATTGCTTTGGGGATTGCAAGGGGGCTCACGTATTTGCATGAAGAGTGCAGCACTCAGATAATTCACTGTGACATAAAGCCTCAGAATATACTCCTGGATGAGTTTTTCACTCCAAGGATTTCTGATTTTGGCTTGGCAAAGTTGTTGCTGGCTGAGCAAACTAAAGCTGCTAGAACTGGTTTGAGAGGGACAATTGGTTACTTTGCACCAGAATGGTTTAGGAAAGCTACAATCACAACCAAAGTAGATGTTTACAGTTTTGGAGTGGTGCTGTTAGAGATCGTATGTTGCAAGTCAAGTGTTGCATTTGCGTTGGAAAGTGAAGAAGAGGCACTCATAGATTGGGCTTATCGATGTTATAGCCAAGGGAATGTAGCTAAATTGGTGGAAAATGATGAGGAGGCAAAGGATGATATGAAGAGGCTGGAGAAGCATGTCATGGTTGCAATTTGGTGCATTCAAGAGGATCCTTCACTCAGACCTTCCATGAAAAAGGTTACACAGATGCTTGAGGGTGTTACAACAGTTTCTGTGCCACCTTGCCCTTCTATATTCACTTCATCTTCTTTTTAA 2499 0.4266 MLFDESKFIGWLIATMASLTFPFPYSYVVLLIVLLFLSSLFTATSSNCGGSSVNLTSSLNSKDSTTAWNSPSGHFAFGFESVLYDNKEFMSVLAVWFAKDPNKTMVWYAKPGKEKTHLFPLGSTVNLTSKGIVVYDPKGHDMLWQRPENNTDSLVSCAFVLDNGSFELVDDDGKRVWESFEEPTDTILPGQNLSRPRSFRARQSDTSFDDGNFELSWQGDSNLVLYHSPKSSNDDAESSQSPTHDAYWATGTVGTESQLFFDESGHMYIKNGTGTVIRDITNGGSDEFFYMARIDPDGVFRLYRHPKDENKAVANSCSSTWWSVEQKHPDDICLSFTKQTGNVICGFNSYCVSSGERTNCECPEHYSPFEHDNLIGCRPDFPLPSCNRDGWEQNKDLVDFNEYPNLDWPLSDYDKFETGMDKDLCKQRCLEDCFCAVAIYGDGSCWKKKYPMSNGRKHANVTRIAFVKVPKTDLNNDEKEQTTLVIVISILLGSSVFINVLLLVALFAAFFIFYHKRLLNSQNLSVGTVSHFTYKELEEATTGFKQMLGRGAFGKVYKGVLRSNASRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLFGYCDEGEHRLLVYEYMSNGSLAGFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDEFFTPRISDFGLAKLLLAEQTKAARTGLRGTIGYFAPEWFRKATITTKVDVYSFGVVLLEIVCCKSSVAFALESEEEALIDWAYRCYSQGNVAKLVENDEEAKDDMKRLEKHVMVAIWCIQEDPSLRPSMKKVTQMLEGVTTVSVPPCPSIFTSSSF 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14840g00021 832 ProSiteProfiles Protein kinase domain profile. 542 815 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14840g00021 832 Pfam Protein tyrosine and serine/threonine kinase 544 812 IPR001245 GO:0004672|GO:0006468
Vium14840g00021 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 620 820 - -
Vium14840g00021 832 Gene3D - 183 315 IPR036426 -
Vium14840g00021 832 Gene3D Phosphorylase Kinase; domain 1 514 619 - -
Vium14840g00021 832 PIRSF SRK 22 831 IPR024171 GO:0004674
Vium14840g00021 832 SMART blect_4 50 183 IPR001480 -
Vium14840g00021 832 CDD PAN_AP_plant 392 470 - -
Vium14840g00021 832 Pfam D-mannose binding lectin 122 201 IPR001480 -
Vium14840g00021 832 Coils Coil 767 787 - -
Vium14840g00021 832 CDD STKc_IRAK 548 814 - -
Vium14840g00021 832 SUPERFAMILY Protein kinase-like (PK-like) 524 813 IPR011009 -
Vium14840g00021 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 662 674 IPR008271 GO:0004672|GO:0006468
Vium14840g00021 832 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 59 824 - -
Vium14840g00021 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 92 252 IPR036426 -
Vium14840g00021 832 FunFam S-receptor-like serine/threonine-protein kinase 515 619 - -
Vium14840g00021 832 Gene3D - 50 182 IPR036426 -
Vium14840g00021 832 SMART serkin_6 542 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14840g00021 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 204 306 IPR036426 -
Vium14840g00021 832 ProSitePatterns Protein kinases ATP-binding region signature. 548 572 IPR017441 GO:0005524
Vium14840g00021 832 Gene3D Transferase(Phosphotransferase) domain 1 620 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14840g00021 Vium-Chr14840 67684 70578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14840g00021 524 814 Receptor kinase-like Gene Family AT1G60800 43.478 2.68e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vium14840g00021 PK_Tyr_Ser-Thr 5.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14840g00021 - - vra:106753716 1594.71