Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14840g00017 ATGTCGCATCGGAAGTTCGAGCACCCGAGGCACGGTTCCCTTGGATTTCTCCCAAGGAAGCGAGCTTCTCGTCATCGTGGAAAGGTGAAGTCTTTCCCAAAAGACAATCCTAATCAACCATGCAGGTTGACTGCCTTTGTTGGCTACAAGGCTGGAATGACCCACATCGTCAGAGAAGTTGAGAAACCTGGATCAAAACTTCATAAGAAAGAAACATGTGAAGCTGTCACTATAATTGAAACTCCTCCGTTGGTTGTTGTTGGAGTTGTGGGATATGTGAAGACACCACGTGGCCTTCGTACACTGAATACTGTTTGGGCTCAGCATCTAAGTGAAGAAGTCAAGAGACGATTTTATAAGAATTGGTGCAAATCTAAAAAGAAGGCTTTTACCAAATATACAAAGAAGTACGAAACGGAGGAAGGAAAGAAAGATGTTGAATCTCAGCTTGAGAAATTGAAGAAGTATTCAACTGTCATTCGTGTTCTTGCTCACACTCAGATAAGGAAGTTGAGGGGTCTGAAACAGAAGAAAGCACATTTGATGGAGATCCAAGTTAATGGTGGAACAGTAGCACAGAAGGTGGACTACGCATACAGCTTCTTTGAGAAGCAAATCCCAGTGGATGCAGTTTTTCAGAAAGATGAGATGATTGATATCATTGGTGTGACTAAGGGTAAGGGTTATGAAGGTGTGGTGACTCGTTGGGGTGTTACTCGACTACCTCGCAAGACTCACAGAGGTCTGAGGAAGGTTGCTTGTATTGGTGCCTGGCACCCTGCCCGTGTTTCTTTCACTGTTGCCAGGGCTGGTCAGAATGGTTATCATCATCGAACTGAGTTGAATAAGAAGATCTACAAAGTTGCCAAGACTGGCCAAGAGTCACATGCTGCCATCACTGAATTTGACAGGACGGAGAAGGATATTACCCCAATGGGTGGGTTCCCACATTATGGTGTGGTGAAGGATGACTACATTATGGTGAAGGGATGCTGTGTTGGACCCAAGAAGAGGGTTCTCACTCTTCGTCAGTCCCTTCTCAAACAGACATCTCGGGTTGCTCTGGAAGAGATCAAACTCAAGTTCATAGACACCTCGTCCAAGTTTGGTCATGGCCGATTCCAGACCACTCAGGAGAAACAAAAGTTTTATGGTCGATTGAAGGCATGA 1170 0.4504 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKSFPKDNPNQPCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTPRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYTKKYETEEGKKDVESQLEKLKKYSTVIRVLAHTQIRKLRGLKQKKAHLMEIQVNGGTVAQKVDYAYSFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVAKTGQESHAAITEFDRTEKDITPMGGFPHYGVVKDDYIMVKGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14840g00017 389 MobiDBLite consensus disorder prediction 1 37 - -
Vium14840g00017 389 Gene3D Translation factors 44 385 - -
Vium14840g00017 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Vium14840g00017 389 FunFam 60S ribosomal protein L3 1 77 - -
Vium14840g00017 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 384 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vium14840g00017 389 FunFam 60S ribosomal protein L3 83 207 - -
Vium14840g00017 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Vium14840g00017 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Vium14840g00017 389 FunFam 60S ribosomal protein L3 44 140 - -
Vium14840g00017 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vium14840g00017 389 Gene3D - 83 207 - -
Vium14840g00017 389 FunFam Ribosomal protein L3 265 389 - -
Vium14840g00017 389 FunFam 60S ribosomal protein L3 226 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14840g00017 Vium-Chr14840 36182 39450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14840g00017 1 386 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 85.492 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14840g00017 K02925 - gmx:100792174 740.725