Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14840g00010 ATGGAGGCGGAGCCCGCGTCTGGGCCCGGGCCTGAGTTTAACTCGAAGGAGGAAGCTTTCGCATTCTACCAAGCCCACGCGAAATCTGTGGGTTTCTCCGCCATAATCAAAGCCAGCCGCCGATCCCGAATCTCCGGCAACTTCATCGACGCCAAATTCGCCTGCACTCACTACGGTGCCCCACCAAGCCACAAGCCCAAACGGGCCCCTTCCCGGGCCAAAACCGATTGCAAGGCTTCCATGCACGTGAAACGAACACCCCACGGTACATGGATAATCTCTTCTTTCATCAAACACCATAACCACCAAATTTCCCCCATTCACAGTAGCCCTAAACCCAATAATAATGTTAACAACAAGGCAAGTCCCTCAAGGAAACTCAAGGTTAAAAAAACACCGCAATACTTAACTTTCGCCCAAGGTGACCTTCAATTTTTGCTCAACGCTTTCATGTCTATGCAAAATGAAAACCCTAATTTCTTTTTCGCGGTCGATCTTAACGAGGAGCAGCGGTTGAGGAGTGTTTTCTGGGTGGACGCTAAGGCTAGGCTTGATTATAGACACTTCAGTGATGTGGTGCTTTTGGACACCACTCACGTTAAAAACGAGTGTAGATTGCCCTTTGTTCCGTTTGTTGGTGTGAACCACCATCTTCAGTTTTTCTTGCTGGGATTGGCCTTTGTGTCTGATGGGTCTGAATCCACATATGCGTGGCTGATGAGGAATTGGTTGAGGGCAATGGGAGGAGGTGCTCCAAAGGTGATGCTCACTGACCGTGATGAAGTGCTGAAGAGAGCGGTTGCTCAAGTGGTTCCTGAGTCTTGTCATTGCTTTTGTCTGTGGCATGTGTTGAGTAAGGTTCCAGAGAAACTCGGTCGCCGGATTCGTGGGCACGGTGGGGAGTTTATGAGTGGGTTTAGTGAGTGTGTTTTGAGGTCTAGGACAAAGGAGCAGTTTGAGAATAGGTGGGAGGAGATGGTTGAGAGGTTTGACATGGGTGATGAGAGTTGGTTGTGTGAGATTTATGAGGATCGGAAACAGTGGGTACCTGCGTTTATGAATGGCAGGGTTTTAGCAGGAATGTCGACTGTGCAGAGATCAGAAGCCATGAACTGCCTGTTTGATAAATATGTGCAGAGGAAAACTACTATGAAAGAGTTTCTGGAGCAGTACAGAGTGGTGTTGAGGGGTAAGTGTGAGGAGGAAGCCAAGGCTGATTTTGAAACTCTGCGTCGACAGCCAGCGTTGAAGTCCCCATCACCTTTTGGGAAACAAATGGTGGAGTTGTACACCAATGCAGTGTTTAAGAAGTTCCAGGGTGAGGTCTTGGGAGCTGTTGCTTGTCATCCAAGGAAAGAGAGCGAAGATGGGGCAATGAAAATGTTTAAGGTTCAGGATTTCGAGGACAATCAAGATTTTGTTGTGACGTGGAATGAATCGACTTCAGAAGCATCATGCTCTTGCTATTCATTTGAGTTCAATGGCTATCTTTGTAGGCATGTAATGATTGTGCTACAGATTTCTGGTGTACATAGCATCCCACCTCGGTATATATTAAAACGCTGGACAAAAGATGCCAAGAAAAGAGATCTGTCTGTGGCAGATGTCGTTGTCTCTGACTCTAGGGCTGAGCGCTATAATAATTTATGTCAACGAGCTTTTGAGTTGGGTGACGAAGGGTCTTTATCATACGAGACTTACATTGCTGCTGTAAAGGCGTTGGAAGAAGCTTTGAGAAAGTGTGAGAACCTGGATGGTTCAATTCAGAGAGTCAGAGAACCGAATCTTCCATGTTTTGGTTCTCAAGAGGTAAGCCCTGAACCAGAGATCATTGCTATGGGAGTCGATTCTAGCTGGCAGCAAATGGAAAACCCCAATGCACAAGATCAGAATCCGGATGGCTATTTTTCTACTAAGCGGATTGATTTTGGAATGTGCAACCAATTGAATTCAGTAGCTGCTATTCGTAATGATTATTATTGCAACCAGCATGGCATCCAAGACCGGGGACAGTTGAACTCAATTGCATCCATCCATGATCCCTGTTACATGGCCCCACAAAGGATGCAACCGATGGGTCAAGCCCACGGAGGGTCATCCTCACAGCCGCATGGGATGGAGGTAAAGGTAAAACAGCTAAATTCAAGGCACCAGTCTCAGTGA 2163 0.4702 MEAEPASGPGPEFNSKEEAFAFYQAHAKSVGFSAIIKASRRSRISGNFIDAKFACTHYGAPPSHKPKRAPSRAKTDCKASMHVKRTPHGTWIISSFIKHHNHQISPIHSSPKPNNNVNNKASPSRKLKVKKTPQYLTFAQGDLQFLLNAFMSMQNENPNFFFAVDLNEEQRLRSVFWVDAKARLDYRHFSDVVLLDTTHVKNECRLPFVPFVGVNHHLQFFLLGLAFVSDGSESTYAWLMRNWLRAMGGGAPKVMLTDRDEVLKRAVAQVVPESCHCFCLWHVLSKVPEKLGRRIRGHGGEFMSGFSECVLRSRTKEQFENRWEEMVERFDMGDESWLCEIYEDRKQWVPAFMNGRVLAGMSTVQRSEAMNCLFDKYVQRKTTMKEFLEQYRVVLRGKCEEEAKADFETLRRQPALKSPSPFGKQMVELYTNAVFKKFQGEVLGAVACHPRKESEDGAMKMFKVQDFEDNQDFVVTWNESTSEASCSCYSFEFNGYLCRHVMIVLQISGVHSIPPRYILKRWTKDAKKRDLSVADVVVSDSRAERYNNLCQRAFELGDEGSLSYETYIAAVKALEEALRKCENLDGSIQRVREPNLPCFGSQEVSPEPEIIAMGVDSSWQQMENPNAQDQNPDGYFSTKRIDFGMCNQLNSVAAIRNDYYCNQHGIQDRGQLNSIASIHDPCYMAPQRMQPMGQAHGGSSSQPHGMEVKVKQLNSRHQSQ 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14840g00010 720 Pfam FAR1 DNA-binding domain 22 105 IPR004330 -
Vium14840g00010 720 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 9 583 IPR031052 GO:0006355
Vium14840g00010 720 ProSiteProfiles Zinc finger SWIM-type profile. 473 509 IPR007527 GO:0008270
Vium14840g00010 720 MobiDBLite consensus disorder prediction 103 123 - -
Vium14840g00010 720 Coils Coil 564 584 - -
Vium14840g00010 720 SMART 26again6 484 511 IPR006564 GO:0008270
Vium14840g00010 720 MobiDBLite consensus disorder prediction 693 720 - -
Vium14840g00010 720 Pfam MULE transposase domain 192 285 IPR018289 -
Vium14840g00010 720 MobiDBLite consensus disorder prediction 103 126 - -
Vium14840g00010 720 Pfam SWIM zinc finger 473 505 IPR007527 GO:0008270
Vium14840g00010 720 MobiDBLite consensus disorder prediction 688 720 - -
Vium14840g00010 720 MobiDBLite consensus disorder prediction 60 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14840g00010 Vium-Chr14840 13161 17284 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium14840g00010 MULE 8.2e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14840g00010 - - gmx:100792626 999.193