Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14828g00001 ATGAAGAACTTGAGGTGGCACAAGCAAATTTCCAACAGTGGCAAGTTGGGGAGAAGGCTTTCACTTGGGGAGTACAACCGCGCAGTGTCATGGTCTAAGTATCTGGTGTCTCCGGGGGCTGAGATAAAGGGAGAAGGAGAAGAAGAATGGAGTGCAGATATGTCTCAGTTGCTCATTGGATCCAAATTTGCCTCTGGCAGGCACAGCAGAATCTACAGAGGGGTTTACAAGCAAAAAGATGTGGCAATTAAGCTCGTTAGTCAACCGGAGGAGGATGAGGACTTGGCTGCTTTTCTTGAGAAGCAATTCACTTCTGAGGTCTCTTTGCTCCTTCGATTAGGCCACCCAAATATCATTACTTTTATTGCTGCTTGCAAGAAACCTCCTGTGTTTTGCATAATCACTGAATATTTGGCTGGAGGTTCACTGGGAAAATTCCTGCACCACCAGCAACCAGATATACTTCCACACAAACTTGTTCTGAAGTTAGCCCTTGACATTGCACGGGGGATGCAGTATCTTCATTCTCAAGGGATTCTTCATAGGGATCTCAAATCAGAGAATCTCCTCTTGGGGGAAGACATGTGTGTAAAGGTAGCAGATTTTGGTATCTCATGCTTAGAATCTCAGTGTGGCAGTGCAAAAGGATTCACCGGAACATACCGTTGGATGGCGCCCGAAATGATCAAAGAAAAGCATCATACCAAGAAAGTAGATGTGTATAGTTTTGGCATAGTTCTATGGGAGCTTTTGACAGGAAAAACTCCATTTGACAACATGACTCCAGAGCAGGCAGCATTTGCAGTTTCCCACAAGAATGCAAGACCACCATTGCCATGTGAGTGTCCTTGGGCATTTAGTGATCTGATAAATAGATGCTGGTCAAGCAACCCAGATAAGAGGCCTCATTTTGATGAGATAGTTTCCATTTTGGAGTTCTACACAGAATCACTTGATCAGGATTCAGAGTTTTTGTCAACTTACAAACCAAGTCCTAGTAGTAGTAGTAGTAACACTATTCTTGGGTGCCTCCCAAAATGCAATGCACGCCATAAATTTGGTGCTTGCAAAGCTTAG 1077 0.441 MKNLRWHKQISNSGKLGRRLSLGEYNRAVSWSKYLVSPGAEIKGEGEEEWSADMSQLLIGSKFASGRHSRIYRGVYKQKDVAIKLVSQPEEDEDLAAFLEKQFTSEVSLLLRLGHPNIITFIAACKKPPVFCIITEYLAGGSLGKFLHHQQPDILPHKLVLKLALDIARGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTGKTPFDNMTPEQAAFAVSHKNARPPLPCECPWAFSDLINRCWSSNPDKRPHFDEIVSILEFYTESLDQDSEFLSTYKPSPSSSSSNTILGCLPKCNARHKFGACKA 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14828g00001 358 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Vium14828g00001 358 Pfam Protein tyrosine and serine/threonine kinase 59 311 IPR001245 GO:0004672|GO:0006468
Vium14828g00001 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Vium14828g00001 358 SMART serkin_6 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14828g00001 358 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Vium14828g00001 358 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Vium14828g00001 358 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Vium14828g00001 358 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Vium14828g00001 358 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Vium14828g00001 358 Gene3D Transferase(Phosphotransferase) domain 1 140 339 - -
Vium14828g00001 358 CDD STKc_MAP3K-like 64 311 - -
Vium14828g00001 358 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 51 312 - -
Vium14828g00001 358 ProSiteProfiles Protein kinase domain profile. 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14828g00001 358 Gene3D Phosphorylase Kinase; domain 1 47 138 - -
Vium14828g00001 358 SUPERFAMILY Protein kinase-like (PK-like) 46 313 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14828g00001 Vium-Chr14828 9035 13735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14828g00001 30 320 MAP Kinase Kinase Kinase AT1G62400 63.729 3.11e-134 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vium14828g00001 PK_Tyr_Ser-Thr 4.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14828g00001 - - gmx:100807757 689.493