Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14823g00003 ATGGAAGGAGGAGGAGGAGCTGCTCCGCCTGCTGACACCGTTATGTCGGATGCCGCACCGCATCCAGAACCCCAGCAGCCCCCTACAGCCATGGGGATCGACAATATTCCGGCCACGCTCAGTCACGGTGGCAGGTTCATCCAATACAACATCTTTGGGAACATATTCGAAGTCACCGCCAAATACAAGCCACCCATCATGCCCATCGGCAAAGGCGCATAAGGCATCGTTTGCTCGGCTTTGAATTCGGACACGAATGAGCATGTTGCCATCAAGAAGATTGCGAATGCGTTTGACAACAAGATTGACGCCAAGAGGACCCTCCGAGAAATCAAGCTGCTTCGTCACATGGATCATGAAAACGTGGTTGCAATCAGGGATATAGTGCCACCACCTCAAAGGGAGATCTTCAATGATGTTTACATTGCTTATGAATTGATGGACACTGACCTGCACCAAATCATTCGTTCAAATCAAGCGTTATCAGAGGAGCATTGTCAGTATTTTCTGTATCAAATTCTCCGAGGGTTGAAGTATATACATTCTGCAAATGTTCTGCACAGGGACTTAAAGCCTAGCAACCTTCTCCTGAATGCAAACTGCGACCTAAAAATTTGTGATTTTGGACTGGCTCGAGTTACCTCTGAAACTGATTTTATGACTGAATATGTTGTTACAAGATGGTACCGTGCACCAGAGCTTCTGCTGAACTCTTCTGATTACACAGCAGCAATTGATGTATGGTCTGTTGGTTGTATTTTCATGGAACTGATGGATCGAAAGCCTTTGTTTCCTGGCAGAGATCACGTGCATCAGTTGCGTCTACTTATGGAGTTGATTGGCACCCCTTCAGAAGCTGATTTGGGGTTTCTGAATGAAAATGCTAAGAGATACATTAGGCAATTGCCTGTTTACCACCGTCAATCTTTCCAAGAAAAGTTTCCACATGTCCACCCTGAAGCTATAGATCTTGTTGAGAAAATGTTAACTTTTGACCCTAGAAAAAGGATTACTGTTGAAGATGCACTGGCACACCCGTACTTAACGTCTCTGCATGACATCAGTGATGAACCTGTGTGCATGACTCCTTTTAGCTTTGACTTTGAACAACATGCTTTGACTGAGGAACAGATGAAAGAACTGATATACCGAGAGGCTTTAGCATTTAATCCTGAGTATCAGCAGTAG 1188 0.4495 MEGGGGAAPPADTVMSDAAPHPEPQQPPTAMGIDNIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAXGIVCSALNSDTNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREIFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEADLGFLNENAKRYIRQLPVYHRQSFQEKFPHVHPEAIDLVEKMLTFDPRKRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQ 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14823g00003 395 Pfam Protein kinase domain 68 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14823g00003 395 SUPERFAMILY Protein kinase-like (PK-like) 68 356 IPR011009 -
Vium14823g00003 395 Gene3D Phosphorylase Kinase; domain 1 46 385 - -
Vium14823g00003 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Vium14823g00003 395 Gene3D Transferase(Phosphotransferase) domain 1 147 375 - -
Vium14823g00003 395 ProSiteProfiles Protein kinase domain profile. 63 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14823g00003 395 MobiDBLite consensus disorder prediction 1 36 - -
Vium14823g00003 395 FunFam Mitogen-activated protein kinase 48 157 - -
Vium14823g00003 395 FunFam Mitogen-activated protein kinase 147 375 - -
Vium14823g00003 395 ProSitePatterns MAP kinase signature. 98 201 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vium14823g00003 395 SMART serkin_6 63 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14823g00003 395 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 61 349 - -
Vium14823g00003 395 CDD STKc_TEY_MAPK 56 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14823g00003 Vium-Chr14823 5488 9703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14823g00003 1 395 MAP Kinase Gene Family AT2G43790 87.000 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vium14823g00003 Pkinase 6.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14823g00003 K14512 - gmx:100805830 772.311