Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14817g00001 ATGGAGCCACCAGCAATGTACGGACACTCCCAGCCACTGAACATGCCTCCGCAGATCTCTGCCGCCGAAAGCAACGGCTCCGGCCCCGACCCCGCCCTCGACGCCCACCACCACATTCACTACGAAACTCACGCGCTCGAAGACGGTGCCGCCGGTGCCATGGTCGTTGTCGAGGATGTCACTTCCGATGCGGTCTACGTCTCCGGCGGTGGAGGGCCCGAAGAGTCCAGTCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTACGTCTTCGATGCTGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTGTCTTCGAGTGGTTCGCCATGTGTGGATGTGGTGCCTCAACAGAATCAGAGGGGTTCAATGGAATATCCTGCAAGATGTAGTCTACCACAGCGAGCTGCGTCGTTAGATAGGTTCAGGAAGAAGAGGAAAGAGCGATGTTTTGATAAGAAAGTGAGATATGGTGTACGGCAAGAAGTTGCGCTCAGGATGCACCGTAATAAGGGGCAATTCACTTCATCTAAGAAACAAGATGGAGCTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGATAGTCAATCAGAAACCTCATGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCGTCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTCTGGGCAAATAGGGGTGCTTTAAGAGACCTTTCCAAGAGAAATCATGAACAGTCTCTTGTACCAGTTGAGCAGGTCGATGATGGTAACGTCTCAGATTGTCGGACTGCCGCCAACCCTGCGCATAACAATCTGGCTGCATACTCAGAGCATGATAATCCTGCTTTGGTAGCTGATCGTAAAGTTTTCCAGTCCCAGAAAATGCTCGAGTAG 927 0.5146 MEPPAMYGHSQPLNMPPQISAAESNGSGPDPALDAHHHIHYETHALEDGAAGAMVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDVVPQQNQRGSMEYPARCSLPQRAASLDRFRKKRKERCFDKKVRYGVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEQSLVPVEQVDDGNVSDCRTAANPAHNNLAAYSEHDNPALVADRKVFQSQKMLE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14817g00001 308 CDD ZnF_GATA 208 256 IPR000679 GO:0006355|GO:0043565
Vium14817g00001 308 ProSitePatterns GATA-type zinc finger domain. 209 236 IPR000679 GO:0006355|GO:0043565
Vium14817g00001 308 ProSiteProfiles GATA-type zinc finger domain profile. 203 262 IPR000679 GO:0006355|GO:0043565
Vium14817g00001 308 MobiDBLite consensus disorder prediction 174 227 - -
Vium14817g00001 308 ProSiteProfiles CCT domain profile. 141 183 IPR010402 GO:0005515
Vium14817g00001 308 Pfam CCT motif 141 183 IPR010402 GO:0005515
Vium14817g00001 308 PANTHER GATA TRANSCRIPTION FACTOR 28 7 274 IPR045280 GO:0006355
Vium14817g00001 308 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Vium14817g00001 308 SMART tify_2 72 107 IPR010399 -
Vium14817g00001 308 Pfam tify domain 73 106 IPR010399 -
Vium14817g00001 308 Gene3D - 199 257 IPR013088 GO:0006355|GO:0008270
Vium14817g00001 308 Pfam GATA zinc finger 209 244 IPR000679 GO:0006355|GO:0043565
Vium14817g00001 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 205 261 - -
Vium14817g00001 308 MobiDBLite consensus disorder prediction 182 222 - -
Vium14817g00001 308 MobiDBLite consensus disorder prediction 1 35 - -
Vium14817g00001 308 SMART GATA_3 203 256 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14817g00001 Vium-Chr14817 15357 19376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14817g00001 73 297 Tify Gene Family AT4G24470 61.157 6.36e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium14817g00001 CCT 1.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14817g00001 - - pvu:PHAVU_008G182900g 580.867