Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14807g00001 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAAAGGGAAGGAGATGTTTCTTCTCAAATGGGAAGAAGACACATGTTAGGCCCTCCTGGAACCCTAAATACCATCACCCCTTGTGCAGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCACCATATTTCTCTCCCCATGAGCCTCAAAAGTTTGCTTCAGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAGAGAGCTGATGCAGCAAATAGTCTAGTTTATGAAGCTAATGTGAGGCTAAGAGATCCTGTGTATGGATGCATGGGTGCAATTTCTGGTTTGCAGCAACAAGTTCAATCTTTACAAGCTGAACTTAACGTAGTGAAGGCTGAAATACTTAAATACAAACTCAGGGAAGCTCACATGATACCCTCCTCTCATGTTGCAATGCTTCCTTCGTCTGGGGTTGTTTCAATCGCTGCTCCACCTCCACCACCTCCTCCACCACCTCCACTTCCACCTCCTTCTATTCCTCAAACTTCTTCCTCTTCTTCCATGTACATCCAACTCAGAGATCCCACCACTTACTCCACAATTTCAAGTGATAATATCTCCTATTTTGGTTAA 657 0.4399 MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISGLQQQVQSLQAELNVVKAEILKYKLREAHMIPSSHVAMLPSSGVVSIAAPPPPPPPPPPLPPPSIPQTSSSSSMYIQLRDPTTYSTISSDNISYFG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14807g00001 218 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Vium14807g00001 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 179 - -
Vium14807g00001 218 MobiDBLite consensus disorder prediction 169 188 - -
Vium14807g00001 218 MobiDBLite consensus disorder prediction 169 198 - -
Vium14807g00001 218 Coils Coil 121 148 - -
Vium14807g00001 218 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14807g00001 Vium-Chr14807 2468 4226 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14807g00001 27 169 AS2 family AT2G40470 82.993 1.01e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium14807g00001 LOB 3.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14807g00001 - - ccaj:109797870 375.17