Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium147g00012 ATGGATTCTCATGGCACTTCCCAAGGCTGTCCAAGGGAGCATGAAGGCCATCGTGAGGCGGTTTTCTTACATGGTGACTTGGATCTGTTGATAATTGAAGCCAAGTCTCTTCCAAATTTAGATTTATCTTCTGAAGCAGTTAGAAAATGTGTGACTTTGGGCAACGTGTGCCATCCTCCATTTATGAAAGGACTAAAGTCACACGGTGGAAAAGATAAGATGATAACAAGTGACCCTTATGTTTCAGTATGCATAGCTGGGGCAACCGTTGCTCGAACTAGAGTGATTCCTAACTGTGAGAACCCTTGCTGGGATGAGCAATTTATTGTGCCCGTTGCTCACCCTGCTCATAAAGTGGAGTTTCTTGTGAAGGATAATGATATTCTGGGGGCTGAACTCATTGGGGTGGTGGAGATACCAGTTTACAAGATAATTTCTGGTAATGCTATCAATGATTGGTTTCCCATCATTGGTCAGTATGGAAGCTGCTTAAAACCTTATCCTGAACTGCATCTTTCTGTTCAATATAAGCCAATTGCAGTGAACCGTACACAAAAAGTAATGAATGAGGATGGGACAGCATATTTAGGAGTTTCTAAAACCTATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTGTATCAAGATGCACATATGCCAGATGGTATGATACCTGAAATCCCACTTGAGGGTGGAAAAGTGTTTCAGCAAAATAAATGTTGGGAAGACATATGTCATGCAATTTTGGAAGCTCATCACATGATATACATTATAGGATGGTCAGTTTACCACCCAGTTAGGCTTATCAGAGAGGCAACAAAACCAGTACCTTCAGGGGGAGAGCTTTCACTTGGAGAGCTATTGAAATACAAGTCACAAGAAGGACTCCGAGTGGTTGTGCTGATTTGGGACGACAGAACTTCACATGACAAGTTTCTTCTGAAAACAGATGGTGTCATGCAGACTCATGATGAGGAAACTAAGAAGTTTTTCAAACATTCCACTGTTCATTGTGTGCTATCTCCACGTTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTGGGAACCCTCTTCACACATCACCAGAAATGTGTGCTTGTAGACAGCCTTGGTTCTGGGAATAATCGGAAAATAACTGCTTTTATTGGTGGTTTGGATCTATGTGATGGTAGATATGATACCCCTGAGCATCGGCTTTTTCGTGATATGGATTCGGTTTTTCATAATGATTTTCACAACCCTTCTTTTCAACAACTAAGTTCGAATTCGTGTGCTCCAAGGCAACCATGGCATGACTTACATTGTAAAATTGAAGGTCCAGCAGCATATGATATATTAACCAATTTTGAACAAAGATGGAGGAAGGCCAAAAAATGGCGTGACTTCAGACTCAAAAAGGTGACAAACTGGCATGATGATGCTTTGCTTCGGCTGGATCGAATTTCATGGATTGTCAAACCTGCTCCTTGCCCCAATGGTGAAAAAGCTGTTTATGTAACCGATGAAAATGATCCTGAAAGTTGGAATGTGCAGGTGTTTAGGTCCATAGATTCTGGATCTGTAAAGGGATTTCCGAAGGATGTTTTCAAAGCTAAGGCTCAGAATCTTTTGTGTGGAAAAAATTTGAAAGTTGATCAAAGCATCCATACTGCTTATGTAAGAGCAATAAGATCTGCCGAGCACTTTATATATATTGAGAATCAGTATTTTCTGGGCTCCTCCTATCACTGGCCTTCATATAAAAATAAAGCTGGTGCAAACCACTTGGTTCCCATGGAGTTGGCTTTGAAAATTGCTGGTAAGATCAGTGTAAATGAACGTTTTTCTGTATATATAGTTATACCAATGTGGCCAGAGGGTGTTCCAACAAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAGATTATTGCTGATGCCCTTGCAAAAGCAGGTCTCTCTGATATGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGAGAACCCCCAAGCTCAAATGTTTCTTCAACGACAAGTCCATCTGAAAACCGCGCTTTGGTAGCAGTAAAAAAATTCAGACGTTTTATGATCTATGTCCATGCCAAAGGAATGATAGTTGATGACGATTACGTGATTATTGGATCAGCAAATATTAACCAGAGATCATTAGATGGTTCCAGGGACACAGAAATAGCTATGGGAGCTTATCAACCAAAATATACATGGACAGAAAGTAGACCCCATCCACGTGGCCAGGTGTATGGATACAGAATGTCACTCTGGGCTGAGCACCTTGGTAGCCTTGACCATGTTTTTGGTGAACCTCAGACCCTGGAATGTGTTAAACAAGTGAACAAAATTGCAAAACAAAACTGGGGCATATATGTGTCCGAAGAAGGGAAATACATGAGGGGACATTTGATGCAGTATCCCGTTAAGATCAGCAGGGAAGGAAAAGTGAGTGCATTAGATGATTATGAGTCTTTTCCTGATGTTGGTGGCAAAGTTCTTGGATCACCAAACTCACTTCCCGATCAACTAACCACCTGA 2574 0.413 MDSHGTSQGCPREHEGHREAVFLHGDLDLLIIEAKSLPNLDLSSEAVRKCVTLGNVCHPPFMKGLKSHGGKDKMITSDPYVSVCIAGATVARTRVIPNCENPCWDEQFIVPVAHPAHKVEFLVKDNDILGAELIGVVEIPVYKIISGNAINDWFPIIGQYGSCLKPYPELHLSVQYKPIAVNRTQKVMNEDGTAYLGVSKTYFPLRKGGSVTLYQDAHMPDGMIPEIPLEGGKVFQQNKCWEDICHAILEAHHMIYIIGWSVYHPVRLIREATKPVPSGGELSLGELLKYKSQEGLRVVVLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDSLGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDMDSVFHNDFHNPSFQQLSSNSCAPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWIVKPAPCPNGEKAVYVTDENDPESWNVQVFRSIDSGSVKGFPKDVFKAKAQNLLCGKNLKVDQSIHTAYVRAIRSAEHFIYIENQYFLGSSYHWPSYKNKAGANHLVPMELALKIAGKISVNERFSVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALAKAGLSDMYHPQDYLNFYCLGKREPPSSNVSSTTSPSENRALVAVKKFRRFMIYVHAKGMIVDDDYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTESRPHPRGQVYGYRMSLWAEHLGSLDHVFGEPQTLECVKQVNKIAKQNWGIYVSEEGKYMRGHLMQYPVKISREGKVSALDDYESFPDVGGKVLGSPNSLPDQLTT 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium147g00012 857 Gene3D Endonuclease Chain A 520 758 - -
Vium147g00012 857 Pfam C2 domain 25 156 IPR000008 -
Vium147g00012 857 SUPERFAMILY Phospholipase D/nuclease 201 464 - -
Vium147g00012 857 PANTHER PHOSPHOLIPASE D 18 846 IPR015679 -
Vium147g00012 857 Pfam Phospholipase D C terminal 777 847 IPR024632 -
Vium147g00012 857 FunFam Phospholipase D delta 231 477 - -
Vium147g00012 857 Pfam Phospholipase D Active site motif 360 394 IPR001736 GO:0003824
Vium147g00012 857 Pfam Phospholipase D Active site motif 704 730 IPR001736 GO:0003824
Vium147g00012 857 CDD C2_plant_PLD 20 176 - -
Vium147g00012 857 SMART C2_3c 26 153 IPR000008 -
Vium147g00012 857 SUPERFAMILY Phospholipase D/nuclease 549 774 - -
Vium147g00012 857 Gene3D Endonuclease Chain A 231 478 - -
Vium147g00012 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 703 730 IPR001736 GO:0003824
Vium147g00012 857 Gene3D C2 domain 21 177 IPR035892 -
Vium147g00012 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824
Vium147g00012 857 PIRSF PLD_plant 12 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vium147g00012 857 ProSiteProfiles C2 domain profile. 7 154 IPR000008 -
Vium147g00012 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 23 178 IPR035892 -
Vium147g00012 857 SMART pld_4 359 394 IPR001736 GO:0003824
Vium147g00012 857 SMART pld_4 703 730 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium147g00012 Vium-Chr147 86208 96190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium147g00012 15 856 Phospholipase D Gene Family (Wang group) AT2G42010 53.165 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium147g00012 K01115 - gmx:100810824 1578.53