Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium147g00004 ATGTTGGACGCCATGGATGAACGTCTAACAAAAAAGTATGCATTCCATGATCCCAACTATATTGTTAGGGACAAAGTATACAACTTTATCAAACTCATCAATACAGTGTCCATTTTTGTTCTTCTGATCTTTTTGGTAGCATCAAATCCAAGCTCAGCAACGCCCTCTCCCTCTCCTTCTCCCACCATTTCCCCCACCAACAATTCTACATGCCCAGTGCCCATGCATTATGTTCAAACAGTCCCTTGGAACATCTCTTCCTGCCAAAATTTCCAACCCTTGTCAACCCAATACCAAACAAGCACAAGTTCTTGTTGCCAAACTCTCCTATCTCTCTTTGGGGTAGCACTTGCACAAAACCTCAAGGAAAACTCCCTTTTTCAACTACCCAATCTCCCTACATCTATCTCTTGCCTCCAACACTTCCAATCCAATCTCACATCCCTCTCACTTCCCAACAACCTTGTCTCCTCCTGCTTTGATCCACAACAATTTGTCATCACTCCCAACATCTGTGCTCGGATTCAAAACATGGAAGATTGGCTCACCAGGCTTGGATCTACGCCACAGCTCGACAATGCGTGTAAACCCGACCTTAGTGATAGAAACCAATGCAGAAAGTGCGTGGCTGAGGGGGACAAGGTTCAGCAGAAGCTTAGTGCCATTGATGGTAATGAATCACATTCCCAAGATTGCTTTTACTTCACAGCACTTTACATGGCTGGAGTGGCCAATCAGTATGGCCCTGAGAGCAGAGGTGCTTTGTCTTGCATTTTGACTTTGTTGCTTAATTCACAAGTTGATTCAAGGGATGGCCATCGTGCTCTTAGGCTTGGTTTGTTTGTAGCTTCACTTGCAGTCGTGGTAATCCTGTTGTTAGGATCAGGGTTGTATTTTTGGTATACCAAGAGAAGAAGTGTTGAAAATTTGCTCGCCTATGCTGATCTACAGGACGAAAGGTTCAGGCTAAGGCTGGGACCAAATACAGCGTTAACTTGGTTTGAAATTGAGAGTCTCGTGAAGGCCACCAATAATTTTTCACCTCAGAATTTCATTGGTAGAGGTGGGTTTGGGATGGTTTACAAGGGCATTCTACCTGATGGCACAATGGTTGCGGTGAAAAGGCTTGAAGAATCCGATTCTCAAGGAGATACTCTGTTCTACAGTGAGGTTGAGATTGTTAGCAACTTGAAGCACCGTAATCTGGTGCCACTAAGAGGGTGTTGTTTGGTTGATGGGAGTCACAATCTTGAGTACAGAGGAAGGTATCTAGTTCATGAATATATGCCAAATGGAAGTCTTCAAGACCATCTTTTTCCAACCAAATTAGAGAATCAATATGCAAAGAAATCACTGACTTGGACTCAAAGAAAAAGCATAATCTTGGATGTGGCAAATGCATTGGTTTATTTACACTTTGGAGTTAAGCCTGCAGTGTATCACAGAGATATTAAAGCCACCAATATACTACTTGATGCAGATATGAGGGCGAGGGTTGGAGATTTTGGGCTAGTCAAACGGAGTAGTGAAAGTACGTCTCATCTAAATACAATAGTTGCTGGAACTCGTGGATATGTAGCACCTGAATATGCACTCTATGGTCAACTAACTGAGAAGAGTGACGTCTACAGCTTTGGTGTGGTTGTTCTTGAGATAATGTGTGGAAGAAAAGCCCTTGAGGTGTCCTCATCAGGGACACCGGTTTTCTTGATCACAGATTGGGTTTGGTCATTAATGAAATCTGGAAACATAGGAGAGGCTTTGGATGCTTCTATGTTTGGAGACGGAAATCATGCTACAAACATAATGGAGAGGTTTTTACTGGTTGGAATTCTTTCTTCTCATGTAGTTGTTGCTTCAAGGCCAACAATTTTGAATGCCTTGAAGATGTTAGAAGGGGATATTGAAATCCCACCAATTCCAGATAGGCCACTGATGCACGGGCACTATGTAATGTACGATCGTGATTGCTCTGGGATGAGCTCTGGATGTGGGTTTGTGAGCTCATGA 2010 0.4318 MLDAMDERLTKKYAFHDPNYIVRDKVYNFIKLINTVSIFVLLIFLVASNPSSATPSPSPSPTISPTNNSTCPVPMHYVQTVPWNISSCQNFQPLSTQYQTSTSSCCQTLLSLFGVALAQNLKENSLFQLPNLPTSISCLQHFQSNLTSLSLPNNLVSSCFDPQQFVITPNICARIQNMEDWLTRLGSTPQLDNACKPDLSDRNQCRKCVAEGDKVQQKLSAIDGNESHSQDCFYFTALYMAGVANQYGPESRGALSCILTLLLNSQVDSRDGHRALRLGLFVASLAVVVILLLGSGLYFWYTKRRSVENLLAYADLQDERFRLRLGPNTALTWFEIESLVKATNNFSPQNFIGRGGFGMVYKGILPDGTMVAVKRLEESDSQGDTLFYSEVEIVSNLKHRNLVPLRGCCLVDGSHNLEYRGRYLVHEYMPNGSLQDHLFPTKLENQYAKKSLTWTQRKSIILDVANALVYLHFGVKPAVYHRDIKATNILLDADMRARVGDFGLVKRSSESTSHLNTIVAGTRGYVAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALEVSSSGTPVFLITDWVWSLMKSGNIGEALDASMFGDGNHATNIMERFLLVGILSSHVVVASRPTILNALKMLEGDIEIPPIPDRPLMHGHYVMYDRDCSGMSSGCGFVSS 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium147g00004 669 SMART serkin_6 346 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium147g00004 669 FunFam Receptor-like serine/threonine-protein kinase At4g25390 311 428 - -
Vium147g00004 669 ProSiteProfiles Protein kinase domain profile. 346 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium147g00004 669 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 82 651 - -
Vium147g00004 669 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 429 639 - -
Vium147g00004 669 Gene3D Transferase(Phosphotransferase) domain 1 429 637 - -
Vium147g00004 669 Pfam Protein kinase domain 349 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium147g00004 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vium147g00004 669 SUPERFAMILY Protein kinase-like (PK-like) 328 631 IPR011009 -
Vium147g00004 669 Pfam SPARK 67 233 IPR043891 -
Vium147g00004 669 Gene3D Phosphorylase Kinase; domain 1 314 428 - -
Vium147g00004 669 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium147g00004 Vium-Chr147 25569 29752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium147g00004 63 652 Receptor kinase-like Gene Family AT1G11050 56.594 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vium147g00004 Pkinase 3.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium147g00004 - - vra:106765729 1209.13