Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1479g00021 ATGTTGACTTGCATAGCTTGTACCAAACAACTCAATAATGGATCTCTTCGCCAAGAAGAAGAGGAAGAAGCTGTTCACACACCCAGCACAAAGCAAGCCATCAAGGCTCTCACTGCACAGATCAAGGACATGGCAGTGAAGGCTTCCGGGGCCTATAAGAGCTGCAGACCTTGTTCGGGATCTTCCAATGGTAACAGAAATAGGAAGTATGCAGACTCAGATATGGGGTCAGAGTCAGCCAGGTTCAACTGGGCCTACCGCAGAACTGGGAGCTCCAATTCAACCCCAAGGATGTGGAGGAAGGAAACAGAAGGTGGCAGGGTGAAAGGGCTTTCCAGTGGGGAAGGAACACCAGCTTCAGTGAGTGGACGCACTGAGTCAGTGGTGTTCATGGAGGAGGATGAGCCTAAGGAGTGGATTGCACAAGTGGAGCCTGGTGTGCTTATTACTTTTGTTTCATTGCCTCAGGGAGGGAATGATCTCAAAAGGATACGGTTCAGTCGTGAAATGTTCAATAAATGGCAAGCTCAGAGGTGGTGGGCAGAGAATTATGACAAGGTCATGGAGTTGTACAATGTTCAGAGGTTCAATCAGCAAGCAGTTCCTCTTCCAACCCCACCTAGATCTGAAGATGAGAGCTCAAAGATTGAATCTGCTAGGGACAGTCCTGTCACTCCTCCACTGAGCAAAGAGCGTGCACCCCGCCATTTTCACCACCCAATGGGAATGGGCTACTCCTCATCAGATTCACTGGATCACCACCAAATGCATCCTCACCCTTGTTATGAAACAAGTGGTCTGGCATCAACACCTAATCTTTCCAACATTAGTGCACCAAAGACTGAAAAATCATCCCTTGATGGTTCTGTAAGGACCAGTTCATCTGGTGAAGATCACTCAGGCGAGTTTTCAATCAGCAATGCCAGTGATATGGAAACTGAATGGGTTGAACAGGATGAACCAGGAGTCTACATCACTATCAGAGCACTGCCTGGTGGAACTAGAGAACTCAGGCGTGTTCGGTTCAGCCGAGAAAGGTTTGGAGAAATGCATGCAAGATTGTGGTGGGAAGAGAACCGTGCTAGGATACAAGAACAATACTTGTGA 1107 0.4806 MLTCIACTKQLNNGSLRQEEEEEAVHTPSTKQAIKALTAQIKDMAVKASGAYKSCRPCSGSSNGNRNRKYADSDMGSESARFNWAYRRTGSSNSTPRMWRKETEGGRVKGLSSGEGTPASVSGRTESVVFMEEDEPKEWIAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNQQAVPLPTPPRSEDESSKIESARDSPVTPPLSKERAPRHFHHPMGMGYSSSDSLDHHQMHPHPCYETSGLASTPNLSNISAPKTEKSSLDGSVRTSSSGEDHSGEFSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSRERFGEMHARLWWEENRARIQEQYL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1479g00021 368 Pfam Transcription factor regulating root and shoot growth via Pin3 312 367 IPR013591 -
Vium1479g00021 368 Pfam Transcription factor regulating root and shoot growth via Pin3 137 191 IPR013591 -
Vium1479g00021 368 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 368 IPR044532 -
Vium1479g00021 368 ProSiteProfiles BRX domain profile. 137 192 IPR013591 -
Vium1479g00021 368 MobiDBLite consensus disorder prediction 200 312 - -
Vium1479g00021 368 ProSiteProfiles BRX domain profile. 313 368 IPR013591 -
Vium1479g00021 368 MobiDBLite consensus disorder prediction 90 123 - -
Vium1479g00021 368 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Vium1479g00021 368 MobiDBLite consensus disorder prediction 265 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1479g00021 Vium-Chr1479 183090 187080 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1479g00021 1 368 Major Intrinsic Protein MIP AT1G31880 49.608 1.18e-105 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1479g00021 - - gmx:100805480 727.628