Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1479g00016 ATGGATCTGTTTCCTTGGTGTCTGATAATTGGAACACTGGCAATTTCTTTCACGTTCTTCACTCTCGTAATGCTTGGATGGTGCTTGGATATCAATCACATATTATCCCTTCCTACAACAGGCTTATCTTTTGATGACAAGTTCTCTCCTTGCATGAGTTTGGAGTCTCATTCGATTACCTTCAACTACCAGGCTGCAGAGGGCACACACCAGACTGAATGTGTTATCTGTTTGACAAGTTTTGAAGAAGAGGAAAGTGTACGGAAGCTTCACTCTTGCAAGCACATCTTCCACACCCTTTGCATTGACAAGTGGCTTGGATCTCATTCAGGTTGTCCACTGTGCCGCACTCAGATTGATAAAGTGAGTTCCCAAAACAGTAGAGTGTCTTTGGAAGAAAATGATCACATGATCATGGTCATTGTCAACTCCTGA 435 0.4276 MDLFPWCLIIGTLAISFTFFTLVMLGWCLDINHILSLPTTGLSFDDKFSPCMSLESHSITFNYQAAEGTHQTECVICLTSFEEEESVRKLHSCKHIFHTLCIDKWLGSHSGCPLCRTQIDKVSSQNSRVSLEENDHMIMVIVNS 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1479g00016 144 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 126 - -
Vium1479g00016 144 Pfam Ring finger domain 73 116 IPR001841 -
Vium1479g00016 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 126 IPR013083 -
Vium1479g00016 144 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Vium1479g00016 144 SMART ring_2 74 115 IPR001841 -
Vium1479g00016 144 SUPERFAMILY RING/U-box 73 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1479g00016 Vium-Chr1479 122874 123308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1479g00016 57 130 C3H Transcription Factor Family AT1G72220 48.684 5.85e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1479g00016 - - gmx:102661636 261.922