LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1479g00015	ATGACATATTCTAATTCTTTCCGAGTTTTTGATAGAATCAAACGTGTAATATTTGTGTGTGTCTTGCTGGCAGCGATAGACAATAATAATAGTAATAATTCTTCATATCCAGTGACAGATTTTGCTTATGATAATGACTCCCCTCAGATAAAGTTCGATGTGTTTGTTAGCTTTAGAGGCACAGATATCCGGCAAGATTTCCTTAGCCATTTGATTGAGGCGTTTTCTCAAAGGCATATTAATGCGTTTGTGGATAACAAAGTTGTCAGAGGAGATGGACTGTCTGAAGCACTCATTCGAGCAATTGAAGGATCATCAGTTTCATTGATTATATTTTCACAAGATTATGCTTCTTCACACTGGTGTTTGTCAGAGCTTGTGAAAATTGTTGAGTGTAGAAAGAAAAATGGTCAGATTGTACTACCTGTCTTCTACAAAGTGGATCCTGCACATGTAAGACATCAGAAAGGGACTTATGAACATGCCTTCGCTAAACATCAGATAAGATATAGTTTGACCACTATGCAAATCTGGAGAACTGCTTTGACTGAAGCTGCTAATCTGGCAGGATTTCATTCATCAACTTTTCGGGACGAAGCTGAGTTTATTAAAGAGATAGTTAAGTGCGTGTTGAGTCGGTTGAATCAAGTGCAACAAGGTAAATCCAAAGGGCTTGTTGGAGTTGGTAAACGAATTGCACATGTTGAATCACTGCTACAATCAGAAGAGCCTGATGTACGTGTTATGGGCATATGGGGCATGGGTGGCATTGGTAAAACAACCATTGCACAAGAAGTATATGACAAGTTGTGCTTTGAATATGAAGGTTGCTGTTTTTTGGCTAACATAAGAGAAGAATCGGGAAGGCTTGGAATAATCTCTTTAAAGAAGAAGCTTTTCTCAACATTATTAGGAGGAGAGGATTTGAAAATTGACACACCTAACGGATTGCCTCAATATATTGAGAGAAGGCTTCGACGTATGAAAGTTCTCATCATTCTTGATGATGTCAATGATTCAGATCAACTTGAAGTTTTAGCTGGAACACGTGATTGGTTTGGATCAGGTAGCAGAATCATCATAACAACCAGAGATAAACAGGTACTTGCTAGACAGTTTGCTAGTATATATGAGGTTGAGGCATTAAACTTTGATGAATCCTTAAGGCTATTCAATTTGAATGCCTTTAAGCAAAATCATCTTGAAAGCGAGTACCATGAGCTTTCAAAGAAAGTGGTCAACTATGCAAAAGGGATTCCACTAGTTCTTAAAGTTTTGGGTCACCTTCTTCATGGAAAAGATAAGGAAACTTGGGAAAGCCAATTGGAAAGACTCAAAAAAGTACAGAACAGAAAGGTCCATGATATTATTAAATTGAGTTACAATGATCTTGATCGGGATGAAAAGAAGATATTTTTAGATATTGCATGCTTTTTCGATGGACTGAATCTGAAGGTAAAGCATATGAATTTTTTATTGAAAGACCATGATTATTCAGTGGTTGCCGGATTAGAAAGGTTGAAAGATAAAGCTCTTATCAGTGTTTCTCAAGAAAATGGTGTATCGATGCACAACATTATACAAGAAACAGCTTGGCAGATTGCTCGAGAAGAATCAATTGAAAATCCTAGAAGCCAGATTCGACTATTGGATCCTGAGGACATTTATCATGTACTAAACTACAATAAGGGTGATGAGGCCATCAGAAGCATAGTGATCAACTTGTCAAGAATAAAACAACTGCAATTAAACCCTCAAGTGTTTGCAAGGATGAGCAAACTACATTTTCTAGATTTTTATAGTAAAGGGTCTTGTAGTTGCCTCGGGGATCAAGGAGGCTTGTATCTTCCACAAGGGCTTGAATCTCTATCAAATGAACTAAGATATCTTCGTTGGACCCATTATCCTTTGGAATCTTTGCCTTCAAAGTTTTCTGCTGAAAATCTTGTTGAATTGAACTTACCAAATAGCCGACTGAAAAAAGTTTGGCAAGAAACACCGGATCTTGTTAACTTAAGGGTCCTTATACTGCATTCATCAACAAGACTAAAGGAGCTACCAAATTTTTCAAAGGCCACAAATCTTAAAGTGATAGATCTCAGATTTTGTGTACGTCTGACTAGTGTGCATTCATCAATTTTTTCTGTTAGAAATCTTGAGAAACTGTATCTAGGTGGCTGCCTTTCCCTTAGAAGCCTTCGAAGCAATGTCCATTTGGACTCTCTTCGTTATCTCTCCCTCTATGGATGCATGTCACTGAAGGATTTCTCAGTGACCTCAAAGAATATGGTAAAGTTGAATTTAGAACTCACTGGAATCAAGCAACTACCTTCATCATTTGGACTTCAAAGCAACCTCCAAAAGCTACGGTTGGCATACACTTACATTGACCACTTGCCAACAAGTATCAAGCATCTTACAAGGTTGCGACATCTTGATCTAAGATATTGCAGAGAGCTTCGAACTCTACCAGAGCTTCCAGCATCACTTGAAACACTAGATGCCCGTGGATGTATATCACTTGAGACTGTAACGTTCCCTTCTACTGCTGGTGAACAACTGAAGGAAAATAAGAAAAGAGTTGCTTTCTGGAACTGCTTGAAATTGGATGAACCTTCTCTCACTGCTATTGAGTTGAATGCACAAATTAACATGATGAAATTTGCACACCAACATTTTTCCCTATTTGGGGATGCTCAAAGCACGTATGTGTATCCTGGAAGTAGAGTTCCAGAATGGCTGGCTCATAAGACAACACATGATGACTTCGTGATTATTGATCTCTCTTCTGTTCTTTCTCCACAATCCTCACACATAGGCTTCATTTTTGGCTTTGTTGTTCCAGAAGTCCCATTTGGGGGATCAGCTTTGGAATTTAAGATTAGTACTAGTGGTGAAGGTAGCCATATCAATGTGTACATGGACAGACCAAGACATCGTATTACATCGGATCATGTGTATCTAATGTATGACCAGGCATGTTCTCGATACCTAAACGGTCGTACCAAACATGAGCCAAGGATCAAAATTAAGGTTGCATTGGCATCTCGAACGCTCACATCCAAGTACGTACCATTAAAGCTAAGAGCTTTTGGAATCAGTGTAATAAACACTACAGACTTTCACAGTTTTGTTCAAAAAGTAAAATTTGGTGATAATGTTCCAAATGTCCCAATTTTGTCAAGATTTTTCTGTACTTTCTGCATTGTTGTCTTTGTCGGGACTTTTAATATTTGTATCAGAAGATTGGTATAG	3255	0.3813	MTYSNSFRVFDRIKRVIFVCVLLAAIDNNNSNNSSYPVTDFAYDNDSPQIKFDVFVSFRGTDIRQDFLSHLIEAFSQRHINAFVDNKVVRGDGLSEALIRAIEGSSVSLIIFSQDYASSHWCLSELVKIVECRKKNGQIVLPVFYKVDPAHVRHQKGTYEHAFAKHQIRYSLTTMQIWRTALTEAANLAGFHSSTFRDEAEFIKEIVKCVLSRLNQVQQGKSKGLVGVGKRIAHVESLLQSEEPDVRVMGIWGMGGIGKTTIAQEVYDKLCFEYEGCCFLANIREESGRLGIISLKKKLFSTLLGGEDLKIDTPNGLPQYIERRLRRMKVLIILDDVNDSDQLEVLAGTRDWFGSGSRIIITTRDKQVLARQFASIYEVEALNFDESLRLFNLNAFKQNHLESEYHELSKKVVNYAKGIPLVLKVLGHLLHGKDKETWESQLERLKKVQNRKVHDIIKLSYNDLDRDEKKIFLDIACFFDGLNLKVKHMNFLLKDHDYSVVAGLERLKDKALISVSQENGVSMHNIIQETAWQIAREESIENPRSQIRLLDPEDIYHVLNYNKGDEAIRSIVINLSRIKQLQLNPQVFARMSKLHFLDFYSKGSCSCLGDQGGLYLPQGLESLSNELRYLRWTHYPLESLPSKFSAENLVELNLPNSRLKKVWQETPDLVNLRVLILHSSTRLKELPNFSKATNLKVIDLRFCVRLTSVHSSIFSVRNLEKLYLGGCLSLRSLRSNVHLDSLRYLSLYGCMSLKDFSVTSKNMVKLNLELTGIKQLPSSFGLQSNLQKLRLAYTYIDHLPTSIKHLTRLRHLDLRYCRELRTLPELPASLETLDARGCISLETVTFPSTAGEQLKENKKRVAFWNCLKLDEPSLTAIELNAQINMMKFAHQHFSLFGDAQSTYVYPGSRVPEWLAHKTTHDDFVIIDLSSVLSPQSSHIGFIFGFVVPEVPFGGSALEFKISTSGEGSHINVYMDRPRHRITSDHVYLMYDQACSRYLNGRTKHEPRIKIKVALASRTLTSKYVPLKLRAFGISVINTTDFHSFVQKVKFGDNVPNVPILSRFFCTFCIVVFVGTFNICIRRLV	1084

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1479g00015	1084	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	222	475	IPR027417	-
	Vium1479g00015	1084	Pfam	NB-ARC domain	236	462	IPR002182	GO:0043531
	Vium1479g00015	1084	Pfam	TIR domain	51	222	IPR000157	GO:0007165
	Vium1479g00015	1084	Gene3D	Ribonuclease Inhibitor	756	888	IPR032675	-
	Vium1479g00015	1084	PRINTS	Disease resistance protein signature	324	338	-	-
	Vium1479g00015	1084	PRINTS	Disease resistance protein signature	416	430	-	-
	Vium1479g00015	1084	PRINTS	Disease resistance protein signature	804	820	-	-
	Vium1479g00015	1084	PRINTS	Disease resistance protein signature	248	263	-	-
	Vium1479g00015	1084	SUPERFAMILY	L domain-like	571	842	-	-
	Vium1479g00015	1084	SMART	till_3	51	188	IPR000157	GO:0007165
	Vium1479g00015	1084	ProSiteProfiles	TIR domain profile.	50	214	IPR000157	GO:0007165
	Vium1479g00015	1084	FunFam	Disease resistance protein (TIR-NBS-LRR class)	48	216	-	-
	Vium1479g00015	1084	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	53	757	IPR044974	GO:0006952
	Vium1479g00015	1084	SUPERFAMILY	Toll/Interleukin receptor TIR domain	45	191	IPR035897	-
	Vium1479g00015	1084	SUPERFAMILY	"Winged helix" DNA-binding domain	452	559	IPR036390	-
	Vium1479g00015	1084	Gene3D	-	217	377	IPR027417	-
	Vium1479g00015	1084	Gene3D	Ribonuclease Inhibitor	556	755	IPR032675	-
	Vium1479g00015	1084	Gene3D	-	381	465	IPR042197	-
	Vium1479g00015	1084	Gene3D	-	49	216	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1479g00015	Vium-Chr1479	100669	105335	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1479g00015	52	850	WRKY Transcription Factor Family	AT4G12020	33.005	4.72e-109	373

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1479g00015	-		-	gmx:100802823	1721.44