LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1479g00014	ATGCAGTCTGTAGTCAATCCAATGTCTTTTCAAGTTTCTCATAGAATCAAATATGTTGTATTCATCTCTCTCGTGTTTGTAACATGTTCTACATCTTCCAATGACACTTCTCAAATAAAGTACGATGTATTTGTTAGCTTCAGAGGTGAAGATGTCCGTAGAGGTTTCCTTAGCCATTTGATCGAGGCATTTTCTCAGAAGCAAATTGCTTTCTTCGTAGATGATAGCATTCAAAAAGGGGAAGAACTATCTGAAGCACTATTTGGAGCAATTGAAGAATCATATATTTCTTTGGTTATATTTTCAGACAACTATGCTTCTTCAAGATGGTGTTTGTCAGAACTTGAGAAAATTTTGGAGTGCAGGAGAAAAAATGGACAAACTGTAGTGCCTATTTTCTACAAAGTTGACCCTTCAGACATACGACATCAAAGGAATACTTATGGAGATGCCTTTGTCAAACATGAAAGAAACTATTCCTTGACTACTGTGCAAACCTGGCGATCTGCTTTGAGTGAATCTGCTAATCTATCAGGATTTCATTTATCCCAATTTCTAGATGAAGCTGAACTTGTTAAAAAGATTGTTAAATCTGTCTGGAGGACGTTGAATCATGTTCACCAAGTTAACTCCAAAGGGCTTGTTGGAATTGGTAAGCGAATAGCACAAGTTGAATCATTGCTGCAATTAGAAACAAAAGATGTTCGCATGATTGGAATTTGGGGCATGGGAGGTATTGGTAAGACAACTATTGCGCAAGAAGTATATAATAAACTGTGTTTTAAATATGACAGTTGTTGTTTTCTGGCTAACATAAGGGAGGAGTCATGGAGACATGGAATAAACTCTTTGAAGGAAAAGCTTTTTTCAACATTATTAAGAGAAGAACATTTGAAAATTGGCAGACCTTTTGGGTTCCAGAAGTTAGTTGAGAGAAGACTTCATCGGATGAAAGTTCTTATTATTCTTGATGATGTCGGTGACGCAGAGCAACTAGAAAATTTAGCCAGAACAGATTGGTTTGGATCTGGTAGTAGAATCATTGTGACAACCAGAGATAAACAGGTGCTTGCTGAGGAGTCTGCCAGTGTATACCATGTTGAAGCCTTAAACTTTGATGAATCTTTGCGACTTTTCAATTTAAATGCCTTTAAGCAAAATCATATAGAGACAGAGTACGAGGAGCTGTCAAAGAAAGCAGTTGATTACGCCAAAGGCATTCCGTTTGTTCTTAAAGTTCTGGGTCACCGTCTTCATGGGAAAGACAAAGAGACATGGGAAAGTGAATTAGAAAGACAACAAGTGCACAACAAAAAGGTTCATGATATTATTAAATCGAGTTACTATGATCTTGAGGAGGATGAAAAGAGGATTTTTTTGGATATTGCATGTTTTTTTTATGGGCAGCAACTGCAGGTAAAGTACATAGATTTTTTATTGAAAGATCGTGATTATTCAGTGGCTGCGGGATTGGAAAGGTTAAAGGATAAAGCTTTTATCAGTATTTCTCAAGAAAATACTGTATCAATGCATGACATCATACAAGAAACTGCTTGGCAGATTGCTGGCGAAGAATCCATTGAAAATCCCAGAAGAAGCCAGATTCGACTATTTGTCCCAGATGACATTTATGATGTACTAACACACAACGAGGGTAACGAGGCTATCAGAAGCATAGTGGTCAACTTGTTGAGAATCAAGCAACTACATTTGAAGCCACAAGTATTTACTAAGATGAGCAAGCTCCACTTTCTAAATATTTACACTGCAGGAACTCGTGATACTCGCTTCTACGAACGGTGGGGCTTGTATCTTCATCAAGGGCTCGAATCCCTGCCGAATGAGCTAAGATATCTTGGTTGGATGCATTATCCTTTGGAATCTTTGCCTTCAAACTTTTCTGCAGAAAATCTAGTTGAGTTGCACTTGCCATACAGCCGGGTGAAAAAACTATGGCATAAAGTGCCGGATCTTGTGAATTTAAAGGTCCTTATGCTGTATTCATCCTCGAACATAAAGGAGCTGCCAGACTTTTCAAAGGCCTCAAACCTTGAAGTAATAGATCTTCGATCCTGTGTAGGGTTGACTAGTGTTCATCCATCAGTTTTCTCTCTCAAAAAGCTTGAGAAATTAGATTTGGATGAATGCAGATCCCTTACAAGCCTTCGAAGCAATGTCCAAATGGAATCCCTTCGTTACCTCTCCCTCTTTAAATGCATGGAACTAAAAGATTTCTCGGTGACCTCAAAGAATATGATAATGTTGAATTTAGAAAAGACAGATATCAAGCAACTTCCTTCATCTTTTGGATCTCAAAGCAAGCTTGAACACTTAAATCTAAAGTTCTCTTCCATTGAGAGCTTGCCTGCAGACATGAAAGATCTTAAAGGGTTGCAACATCTCGATCTACGATACTGTAGGAATCTTAGCTTCCTACCAGAGCTTCCTCCATCTATTGAAACACTAGATTGCCGAGAATGCGTGTCATTGGGGAGCGTAGCATTCCCTTCTATTGCTGAACAATGGAAAGAAAATAAGAAAAAGGCTCTCTTTTGGAACTGCTTGAACTTGGATGAACGTTCACTCAAGGCCATTGAGACGAATGCGCGAATTAACATGGTGAAATTTGCACACCGGCATTTGTCTACATCTGGTGATGCTCACGCTATTTATGTGTACCCAGGAAGCCAGGTTCCAGAATGGTTGACGCATAAGACCACACATGATGATGATTATTATGATGATGATGATGGTGGTGGTGGTGATGATTGCATAACTTTTGCTCCAAATCCCTCTCACCTGGGCTACATTTTTTGCTTGATTTTACCGGCAGTGCAGTATTCGGAAAGGGTTTTGAAATTGACGGTCAGTACTGAAGGTGAAGATGAAGGTGACAGTATGATTGTGTACTTAGACAGACCACGTCATACTATTAAGTCGGATCACGTGTATCTGATGTACAACGAAGCATTATCTCGCTTTCTAACCAGTCGTGCCAAACAGCAACCAATGCTAAAAATTAAGGTTACAGTAGCAACACTAACATTCTCATCAACATACACGGAGGTGCAGTTAAGAGGGTTTGGGGTTAGCACAATCAGCAATCTTCTTCAGAAACGACAATTGTATGATACTCCAATTCCAAAGGAACATTCTGAAGTCTGTCCAGATGCTCTGTGGAATAGCTGA	3189	0.3913	MQSVVNPMSFQVSHRIKYVVFISLVFVTCSTSSNDTSQIKYDVFVSFRGEDVRRGFLSHLIEAFSQKQIAFFVDDSIQKGEELSEALFGAIEESYISLVIFSDNYASSRWCLSELEKILECRRKNGQTVVPIFYKVDPSDIRHQRNTYGDAFVKHERNYSLTTVQTWRSALSESANLSGFHLSQFLDEAELVKKIVKSVWRTLNHVHQVNSKGLVGIGKRIAQVESLLQLETKDVRMIGIWGMGGIGKTTIAQEVYNKLCFKYDSCCFLANIREESWRHGINSLKEKLFSTLLREEHLKIGRPFGFQKLVERRLHRMKVLIILDDVGDAEQLENLARTDWFGSGSRIIVTTRDKQVLAEESASVYHVEALNFDESLRLFNLNAFKQNHIETEYEELSKKAVDYAKGIPFVLKVLGHRLHGKDKETWESELERQQVHNKKVHDIIKSSYYDLEEDEKRIFLDIACFFYGQQLQVKYIDFLLKDRDYSVAAGLERLKDKAFISISQENTVSMHDIIQETAWQIAGEESIENPRRSQIRLFVPDDIYDVLTHNEGNEAIRSIVVNLLRIKQLHLKPQVFTKMSKLHFLNIYTAGTRDTRFYERWGLYLHQGLESLPNELRYLGWMHYPLESLPSNFSAENLVELHLPYSRVKKLWHKVPDLVNLKVLMLYSSSNIKELPDFSKASNLEVIDLRSCVGLTSVHPSVFSLKKLEKLDLDECRSLTSLRSNVQMESLRYLSLFKCMELKDFSVTSKNMIMLNLEKTDIKQLPSSFGSQSKLEHLNLKFSSIESLPADMKDLKGLQHLDLRYCRNLSFLPELPPSIETLDCRECVSLGSVAFPSIAEQWKENKKKALFWNCLNLDERSLKAIETNARINMVKFAHRHLSTSGDAHAIYVYPGSQVPEWLTHKTTHDDDYYDDDDGGGGDDCITFAPNPSHLGYIFCLILPAVQYSERVLKLTVSTEGEDEGDSMIVYLDRPRHTIKSDHVYLMYNEALSRFLTSRAKQQPMLKIKVTVATLTFSSTYTEVQLRGFGVSTISNLLQKRQLYDTPIPKEHSEVCPDALWNS	1062

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1479g00014	1062	FunFam	Disease resistance protein (TIR-NBS-LRR class)	37	205	-	-
	Vium1479g00014	1062	Pfam	TIR domain	40	215	IPR000157	GO:0007165
	Vium1479g00014	1062	ProSiteProfiles	TIR domain profile.	39	203	IPR000157	GO:0007165
	Vium1479g00014	1062	Gene3D	Ribonuclease Inhibitor	546	750	IPR032675	-
	Vium1479g00014	1062	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	41	744	IPR044974	GO:0006952
	Vium1479g00014	1062	Pfam	NB-ARC domain	231	446	IPR002182	GO:0043531
	Vium1479g00014	1062	PRINTS	Disease resistance protein signature	404	418	-	-
	Vium1479g00014	1062	PRINTS	Disease resistance protein signature	237	252	-	-
	Vium1479g00014	1062	PRINTS	Disease resistance protein signature	703	719	-	-
	Vium1479g00014	1062	PRINTS	Disease resistance protein signature	313	327	-	-
	Vium1479g00014	1062	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	203	462	IPR027417	-
	Vium1479g00014	1062	SUPERFAMILY	Toll/Interleukin receptor TIR domain	31	180	IPR035897	-
	Vium1479g00014	1062	SUPERFAMILY	"Winged helix" DNA-binding domain	438	547	IPR036390	-
	Vium1479g00014	1062	Gene3D	-	35	205	IPR035897	-
	Vium1479g00014	1062	Gene3D	-	369	452	IPR042197	-
	Vium1479g00014	1062	Gene3D	Ribonuclease Inhibitor	751	867	IPR032675	-
	Vium1479g00014	1062	SMART	till_3	40	177	IPR000157	GO:0007165
	Vium1479g00014	1062	SUPERFAMILY	L domain-like	560	831	-	-
	Vium1479g00014	1062	Gene3D	-	206	368	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1479g00014	Vium-Chr1479	92617	96215	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1479g00014	36	814	WRKY Transcription Factor Family	AT4G12020	32.870	1.33e-102	353

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1479g00014	-		-	pvu:PHAVU_010G131900g	1540.4