Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1479g00012 ATGGAGGTGGGGGATTTTCTTGAGTATGAAAACAGTGAAATGCATGTTGTTGCTGACACTGGACAGAGTTTAGAATGCATATCGATTGAAAGATCATCTTCTGGGAAGCTTCGATTGGAGTGCACGGAAGGCTCCACAGAGGCTGATTTGGGGAAACTAAATGCAAAATTACAGTACATTGAGCAGATTTTGCAAAAGGTCAAAGAAGAGGAGAAACAACGCATATCATGTGGATCACCTGTTCATTCTCATGTAAATGCAGACAGCCAGTGTTCAGCTGATAAATGTCTTGTCACGGATGGGAAGGTTCAATCTGAAACTCCCTACCAGGAAATTCCTTCTATAGCGTCGAGTTTAAATTATACTCATAGCAATCAATCTGGGAGTATGGATCAGTGTTCTAGACCTTCAGAAGGAGTAATGGAAAGTGGGTCATCTGCTTCTGCTGTCCATTCCAATTTGAAGCCTGACCTTTCAATGTCAGACGGAGAAATATGCTTGGACAAGCTATCAATCAGAGAACTTCATGAACTGTTTAAGGTAACTTTTGGTCGAGAAACTACTGTGAAAGATAAACAGTGGCTGAAAAGGAGGATTGCCATGAGTTTAACCAACTCATGTGATGTTTCAGCAACAACTTTCGTTATTAAAGATAACAAAATAGTTAGAAAATTTGTTGAAGAAAGTTCTGGAAATATGAATGTTGCGTCCTTAATTTCTTCGGAAAATATGACTGAAAAAGAGGATATCAACTTTAAGGATTCGTCTGCTGTAAATGCTTGTGGAATTGATGATAAACAAGTTGTTTCTGAAATAAGATTGAGAAATCAAAATACAGAATATGGATTGGAAGATATGACTAATCAGAAAGAACAGAGAGCTGCAAAAAGAATTAGGAGACCTACAAAGAGATATATTGAAGAGCTCTCTGAAAATGAATCTAAAGAGCACAGTCCTAGGTTGCCAGTATCTAATAAAAACATGGAACTTGGACATGTTTCTTCAACATCACATGTCAGGCCTGCTAGAAATACTTTTTCAGAGGTGAGAACATGTGGCACGAGGTTCGCCTCTCTTGGAGGATCTGATGTCGAGATTCCTTGTGTGTCTTGGATTCGGAGAAGTCGTCCAAGGAAAGATATGGCATCTCTTATGAAATTCCATCCAAGTGCCATGAGTGAGACTGAAAAATTGAGTAATAAGCTCATTGAGCACAGTTCTGATGCTGTTGGTGAGATTCCAGATAAAGTTTTCAAGTCTAGAATGCCTGCTACGTTTCATCAACCATCTTCTTCTGAACCTGAGAAAGAGAAGCAGTGTCCAGTAATAGCAACAATTGAGCCACGGCAGGAATTGAGGCCAAAAAGGGCAGATCCACCAGGCCATACTTCAGATGACAACATAGTTACTGTTCCCACTGCAAAAGGAGGGATGAGGAGGAAGCATCACCGGGCATGGACACTTGTTGAGGTCATAAAGTTGGTTGAAGGCGTGTCAAGGTGTGGAGCAGGGAGGTGGTCTGAAATCAAACGCCTCTCCTTTGCATCATACTCATATCGAACATCTGTTGATCTTAAGGACAAGTGGAGGAATTTGCTCAAAGCTAGCTTTGCAATGACACCTGCACCTTCTGATGAGGGGATAAATTCGCGGAAGCATGGTACGGCTCCAATTCCTGAGAAAATTTTACTACGTGTAAGAGAGCTTGCTGAAATGAATTCTCAGGTTCCTCCAAACATCAGCTCAAACAAGGTAGCAGCTGGTGGAGGGAGTGTGCATGAAGATAGATCAGGCTACTTGTAA 1803 0.4121 MEVGDFLEYENSEMHVVADTGQSLECISIERSSSGKLRLECTEGSTEADLGKLNAKLQYIEQILQKVKEEEKQRISCGSPVHSHVNADSQCSADKCLVTDGKVQSETPYQEIPSIASSLNYTHSNQSGSMDQCSRPSEGVMESGSSASAVHSNLKPDLSMSDGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSATTFVIKDNKIVRKFVEESSGNMNVASLISSENMTEKEDINFKDSSAVNACGIDDKQVVSEIRLRNQNTEYGLEDMTNQKEQRAAKRIRRPTKRYIEELSENESKEHSPRLPVSNKNMELGHVSSTSHVRPARNTFSEVRTCGTRFASLGGSDVEIPCVSWIRRSRPRKDMASLMKFHPSAMSETEKLSNKLIEHSSDAVGEIPDKVFKSRMPATFHQPSSSEPEKEKQCPVIATIEPRQELRPKRADPPGHTSDDNIVTVPTAKGGMRRKHHRAWTLVEVIKLVEGVSRCGAGRWSEIKRLSFASYSYRTSVDLKDKWRNLLKASFAMTPAPSDEGINSRKHGTAPIPEKILLRVRELAEMNSQVPPNISSNKVAAGGGSVHEDRSGYL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1479g00012 600 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 478 537 IPR017930 -
Vium1479g00012 600 SUPERFAMILY Homeodomain-like 480 538 IPR009057 -
Vium1479g00012 600 ProSiteProfiles Myb-like domain profile. 486 533 IPR001005 -
Vium1479g00012 600 MobiDBLite consensus disorder prediction 307 327 - -
Vium1479g00012 600 MobiDBLite consensus disorder prediction 307 322 - -
Vium1479g00012 600 Pfam Myb-like DNA-binding domain 485 533 IPR001005 -
Vium1479g00012 600 CDD SANT_TRF 484 534 - -
Vium1479g00012 600 Gene3D - 473 583 - -
Vium1479g00012 600 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 1 583 - -
Vium1479g00012 600 SMART sant 482 535 IPR001005 -
Vium1479g00012 600 MobiDBLite consensus disorder prediction 575 600 - -
Vium1479g00012 600 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1479g00012 Vium-Chr1479 80420 86607 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium1479g00012 Myb_DNA-binding 5.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1479g00012 - - gmx:100775511 991.875