LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1479g00001	ATGGGAAGAAGACCATGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGACGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGAGGTGACATATCAGTGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATCTGTCAAAGAAGTTACAGAAACATGGTACACCATCATTATCTGTTTCTTCACCTGAACACAAACGTCATGAAGAAGAGAAGATCAAGCAAGTTCATGTCGCACCGGAAGCTCCACGCCCTAGGAGAGTCAGTGCAGTTGAATACAGTAAAATTGTGGAAAATAATAGGTGTAGTCCCTCAAATAAAGTGGAGGGTAGTAGTGATGAAGCTTCTTTGAGTGATTTCCTGATCGATATTGATCAAAGCCATTTGTTGATTGGTGATGATTCAAACTCAAAGGTCCCACAAATGGAGGAAGAGCACAACAACAAACAGGTAGGCTTAACCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGGCAGAGAAATTTGACCCTCTGGAGACCCTCTTGGATGTTGAACTCAAGAGAATGGCTTCCTTTCTTGGACTTGAAAATGATTGA	789	0.4246	MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHGTPSLSVSSPEHKRHEEEKIKQVHVAPEAPRPRRVSAVEYSKIVENNRCSPSNKVEGSSDEASLSDFLIDIDQSHLLIGDDSNSKVPQMEEEHNNKQVGLTNSPSSSSPSDHCHHLLAEKFDPLETLLDVELKRMASFLGLEND	262

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1479g00001	262	CDD	SANT	70	111	IPR001005	-
	Vium1479g00001	262	Gene3D	-	70	142	-	-
	Vium1479g00001	262	MobiDBLite	consensus disorder prediction	212	230	-	-
	Vium1479g00001	262	SMART	sant	12	62	IPR001005	-
	Vium1479g00001	262	SMART	sant	65	113	IPR001005	-
	Vium1479g00001	262	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	65	115	IPR017930	-
	Vium1479g00001	262	MobiDBLite	consensus disorder prediction	199	231	-	-
	Vium1479g00001	262	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	201	-	-
	Vium1479g00001	262	CDD	SANT	15	60	IPR001005	-
	Vium1479g00001	262	ProSiteProfiles	Myb-like domain profile.	61	111	IPR001005	-
	Vium1479g00001	262	FunFam	Transcription factor TT2	69	141	-	-
	Vium1479g00001	262	Pfam	Myb-like DNA-binding domain	67	111	IPR001005	-
	Vium1479g00001	262	Pfam	Myb-like DNA-binding domain	13	60	IPR001005	-
	Vium1479g00001	262	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	64	IPR017930	-
	Vium1479g00001	262	SUPERFAMILY	Homeodomain-like	11	107	IPR009057	-
	Vium1479g00001	262	FunFam	MYB-related transcription factor	12	65	-	-
	Vium1479g00001	262	Gene3D	-	10	66	-	-
	Vium1479g00001	262	MobiDBLite	consensus disorder prediction	117	137	-	-
	Vium1479g00001	262	ProSiteProfiles	Myb-like domain profile.	8	60	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1479g00001	Vium-Chr1479	24057	25859	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1479g00001	1	190	MYB Transcription Factor Family	AT4G09460	50.521	2.31e-55	176

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Vium1479g00001		Myb_DNA-binding	6.7e-16	CL0123