Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1479g00001 ATGGGAAGAAGACCATGCTGTCCCAAAGAGATCAACAAAGGTGCTTGGTCTCGAGAAGAAGACGAAACCCTCTCCAAATATGTTGCCATCCATGGAGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCAGGTTTAAAGCGATGTGGAAAAAGCTGCAGACAAAGGTGGCTGAACTATCTCAAGCCTGGTATAAAAAGAGGTGACATATCAGTGGATGAAGAAGATATGATTATCAGACTTCATCGTCTTCTTGGTAACAGATGGGCATTGATAGCAAAGAGGCTACCTGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATCTGTCAAAGAAGTTACAGAAACATGGTACACCATCATTATCTGTTTCTTCACCTGAACACAAACGTCATGAAGAAGAGAAGATCAAGCAAGTTCATGTCGCACCGGAAGCTCCACGCCCTAGGAGAGTCAGTGCAGTTGAATACAGTAAAATTGTGGAAAATAATAGGTGTAGTCCCTCAAATAAAGTGGAGGGTAGTAGTGATGAAGCTTCTTTGAGTGATTTCCTGATCGATATTGATCAAAGCCATTTGTTGATTGGTGATGATTCAAACTCAAAGGTCCCACAAATGGAGGAAGAGCACAACAACAAACAGGTAGGCTTAACCAACAGTCCTAGCTCATCATCACCTTCTGATCATTGTCACCATCTCTTGGCAGAGAAATTTGACCCTCTGGAGACCCTCTTGGATGTTGAACTCAAGAGAATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 789 0.4246 MGRRPCCPKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISVDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQKHGTPSLSVSSPEHKRHEEEKIKQVHVAPEAPRPRRVSAVEYSKIVENNRCSPSNKVEGSSDEASLSDFLIDIDQSHLLIGDDSNSKVPQMEEEHNNKQVGLTNSPSSSSPSDHCHHLLAEKFDPLETLLDVELKRMASFLGLEND 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1479g00001 262 CDD SANT 70 111 IPR001005 -
Vium1479g00001 262 Gene3D - 70 142 - -
Vium1479g00001 262 MobiDBLite consensus disorder prediction 212 230 - -
Vium1479g00001 262 SMART sant 12 62 IPR001005 -
Vium1479g00001 262 SMART sant 65 113 IPR001005 -
Vium1479g00001 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Vium1479g00001 262 MobiDBLite consensus disorder prediction 199 231 - -
Vium1479g00001 262 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 201 - -
Vium1479g00001 262 CDD SANT 15 60 IPR001005 -
Vium1479g00001 262 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vium1479g00001 262 FunFam Transcription factor TT2 69 141 - -
Vium1479g00001 262 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium1479g00001 262 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vium1479g00001 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Vium1479g00001 262 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Vium1479g00001 262 FunFam MYB-related transcription factor 12 65 - -
Vium1479g00001 262 Gene3D - 10 66 - -
Vium1479g00001 262 MobiDBLite consensus disorder prediction 117 137 - -
Vium1479g00001 262 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1479g00001 Vium-Chr1479 24057 25859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1479g00001 1 190 MYB Transcription Factor Family AT4G09460 50.521 2.31e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium1479g00001 Myb_DNA-binding 6.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1479g00001 K09422 - gmx:547568 432.95