Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14791g00001 ATGGTAAAGTGTGGAGATTATTTTCAGCGAGATGGACCTAGGGAAGTTGGTAATATTTCTGTTATTGTGGTGAACACTACTGAAACTTCACTGTTGCGGCGCCTTTTAGAGGTGAACCATAGAGAGGTAGAAGATGCTCCAATATCTGTTTTGCATATTCAGTATCCGGAATGGCCTGACCACGGAGTTCCCAAAGATACATTAGTGCGTGAAATTTTGAAAAGATTATACCATTTACCACCAAACCTTGGTCCAATAGTGGTCCACTGCAGTGCAGGTATTGGGGTAAACTGGACATATTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCTGCTGTAGATATTGCTAACACAGTAGCTGTGTTCAGGGCCCAGCGTGTTGGAATGGTTCAGACCCAGGATCAGTACATTTTCTGCTATAAAGCTATCATAGATGAAACTGGAAGACCTTGGTATCTCAGCAGTAGAAGGAGCTCGAAGGATGTTAGGCTGTTTGCCTCATTTTGA 522 0.4253 MVKCGDYFQXRDGPREVGNISVIVXVNTTETSLLRRLLEVNHREVEDAPISVLHIQYPEWPDHGVPKDTLAXREILKRLYHLPPNLGPIVVHCSAGIGVNWTYCTIHNTIQRILAGDMSAVDIANTVAVFRAQRVGMVQTQDQYIFCYKAIIDETGRPWYLSSRRSSKDVRLFASF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14791g00001 176 Pfam Protein-tyrosine phosphatase 3 152 IPR000242 GO:0004725|GO:0006470
Vium14791g00001 176 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 73 145 IPR000387 GO:0016311|GO:0016791
Vium14791g00001 176 ProSiteProfiles PTP type protein phosphatase domain profile. 1 154 IPR000242 GO:0004725|GO:0006470
Vium14791g00001 176 PRINTS Protein tyrosine phosphatase signature 88 106 IPR000242 GO:0004725|GO:0006470
Vium14791g00001 176 PRINTS Protein tyrosine phosphatase signature 121 136 IPR000242 GO:0004725|GO:0006470
Vium14791g00001 176 PRINTS Protein tyrosine phosphatase signature 137 147 IPR000242 GO:0004725|GO:0006470
Vium14791g00001 176 PRINTS Protein tyrosine phosphatase signature 50 67 IPR000242 GO:0004725|GO:0006470
Vium14791g00001 176 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 152 IPR029021 -
Vium14791g00001 176 Gene3D Protein tyrosine phosphatase superfamily 1 155 IPR029021 -
Vium14791g00001 176 SMART ptp_7 51 153 IPR003595 -
Vium14791g00001 176 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 2 154 - -
Vium14791g00001 176 SMART PTPc_3 1 156 IPR000242 GO:0004725|GO:0006470
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14791g00001 2 154 Protein tyrosine phosphatase (PTP) family AT1G71860 74.675 1.74e-85 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14791g00001 - - vum:124822731 352.443