Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14788g00001 TCGCTTTCTGCATTGGGTTGCAGTGGAGGAGGAGCAGTGGCATTTTGTGATGCCAAACCAGAACATAGCAATGAACCTCCAAAGAAGAAGGTGGTGGTGCTTGGAACTGGTTGGGCTGGAACCAGTTTTCTGAAAAATATGAAAAGCAACTCCTATGATATTCATGTGGTTTCACCACGTAACTATTTTGCATTCACTCCATTGCTACCAAGTGTAACATGTGGCTCAGTGGAAGCAAGGAGCGTCGTTGAACCCATTCGCAGTATCACCCGCAGGAGCGGTGTAAATATTAGTTTTAGTGAAGCTGAATGCTACAAGATCGATCAAAAGAATAACAAAGTTTTTTGTCGTGCTGTGAAAGCAAAGTCTGGTGAACGAGAAGAATTTTCCATTGATTATGATTACCTGGTAATAGCTATGGGAGGTCGTTCTAATACCTTCAACACACCTGGTGTTGAGGAACACGCCCATTTCCTGAAGGAAGTGGATGAAGCTTTAAAAATCCGTCGGAAAGTGGTTGAACTTTTTGAAAGAGCTAGCCTCCCTACTTTACCAGAGGAAGAGAAGAAAAAGCTTCTGAGTTTTGTAGTCGTTGGTGGTGGTCCAACTGGGGTAGAATTTTCTGCTGAACTTCATGACTTTGTACATGAGGATCTGGCTTATTTATATCCTGAACTTGAAAAGTATGTGAAGATTATTCTCTTGGAGGCAGGCGATCATATCTTAAACATGTTTGACAAGAGAATTACTGAATTTGCTGAACAAAAGTTTGCCAGAGATGGCATTAATGTGAAGTTGGGATCTATGGTTGTGAAAGTTAGTGAAAAGGAAATCACTTCCAAAGAAAGGTCAACTGGTGAAATTGTTACCATACCTCACGGAATGGTAGTTTGGTCAACTGGTATCGGTGCTCGCCCTGAAATAGTTGAATTTATGAAACAGCTTGGCCAGATTAACAGACGTGCATTGGTCACTGATGAATGGCTGAGGGTGGAAGGATCTGACAACATCTATGCTCTTGGTGATTGTGCCACTATAAATCAACGTAGAGTTATGGAAGATATAGCCGTGATATTTAGCAAGGCTGACCAGAACAATTCCGGAAAATTAGATCTTAAAGCATTTAAAGACGTTGTTGATGACATTATTGAAAGGTACCCTCAAGTGGAAATTTATTTAAAGAAGAACCAAATGAAAGACATGGCCAGCTTGCTAAAGAAATCCCAAGAAAGCGGCATTTCTGTGGACATTGAATACTTCAAAGAAGCCCTTTCCAAAGTAGACTCTCAGATGAAAAATCTTCCTGCCACAGCTCAGGTAGCTGCACAGCAAGGAGTGTATCTTGCAGACTGTTTCAACCGCATGGAGTTGTGTGAGAGGTATCCTGAAGGCCCTCTCAGGTTCAGAGGAGTTGGTCGCCATCGATTCCGTCCCTTCAGGTACAAGCATTTAGGACAATTTGCTCCACTAGGAGGAGAGCAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCAGAGCACCCAGTGGCTCTGGTATTCTGTGTATACAAGCAAACAAGTGAGCTGGAGAACAAGGTTTTTGGTGGTTGGTGACTGGGGAAGACGATTCTTGTTTGGTAGGGATTCAAGTCAAATCTAA 1647 0.4256 SLSALGCSGGGAVAFCDAKPEHSNEPPKKKVVVLGTGWAGTSFLKNMKSNSYDIHVVSPRNYFAFTPLLPSVTCGSVEARSVVEPIRSITRRSGVNISFSEAECYKIDQKNNKVFCRAVKDXKSGEREEFSIDYDYLVIAMGGRSNTFNTPGVEEHAHFLKEVDEALKIRRKVVELFERASLPTLPEEEKKKLLSFVVVGGGPTGVEFSAELHDFVHEDLAYLYPELEKYVKIILLEAGDHILNMFDKRITEFAEQKFARDGINVKLGSMVVKVSEKEITSKERSTGEIVTIPHGMVVWSTGIGARPEIVEFMKQLGQINRRALVTDEWLRVEGSDNIYALGDCATINQRRVMEDIAVIFSKADQNNSGKLDLKAFKDVVDDIIERYPQVEIYLKKNQMKDMASLLKKSQESGISVDIEYFKEALSKVDSQMKNLPATAQVAAQQGVYLADCFNRMELCERYPEGPLRFRGVGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWISIGQSTQWLWYSVYTSKQVSWRTRFLVVGDWGRRFLFGRDSSQI 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14788g00001 549 SUPERFAMILY FAD/NAD(P)-binding domain 28 247 IPR036188 -
Vium14788g00001 549 Gene3D - 426 531 - -
Vium14788g00001 549 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 19 380 - -
Vium14788g00001 549 SUPERFAMILY FAD/NAD(P)-binding domain 189 348 IPR036188 -
Vium14788g00001 549 Gene3D - 19 425 - -
Vium14788g00001 549 PRINTS FAD-dependent pyridine nucleotide reductase signature 134 152 - -
Vium14788g00001 549 PRINTS FAD-dependent pyridine nucleotide reductase signature 195 213 - -
Vium14788g00001 549 PRINTS FAD-dependent pyridine nucleotide reductase signature 323 345 - -
Vium14788g00001 549 PRINTS FAD-dependent pyridine nucleotide reductase signature 31 50 - -
Vium14788g00001 549 ProSiteProfiles EF-hand calcium-binding domain profile. 351 386 IPR002048 GO:0005509
Vium14788g00001 549 SUPERFAMILY EF-hand 346 435 IPR011992 -
Vium14788g00001 549 PANTHER NADH DEHYDROGENASE 20 549 IPR045024 GO:0003954|GO:0006116
Vium14788g00001 549 Pfam Pyridine nucleotide-disulphide oxidoreductase 29 354 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14788g00001 Vium-Chr14788 129 4184 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14788g00001 8 549 Chloroplast and Mitochondria Gene Families AT4G21490 67.754 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14788g00001 K03885 - gmx:100820044 981.859