Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14786g00001 ATGGAGCCTTCGTCCTCTTCGCTTCAGGTGGAAACAGCAGAGCGGAAACAATCTAGTCCCCTCCGAAAAATGTTTGCTGTTTCTTCCATTGCTGCGGGAATCCAATTTGGATGGGCCCTGCAACTCTCTCTCTTAACACCCTATGTTCAGACTTTGGGAGTTCCTCATGCCTGGTCCTCTTTCATCTGGCTCTGTGGCCCCATTTCTGGGTTGGTTGTGCAGCCCATTGTAGGGTACACCAGTGATAGATGCACTTCCCGTTTTGGCCGCCGCCGTCCATTCATCATGAGTGGTGCGCTTGCCGTTGCCATCTCTGTGTTTCTCATTGGCTATGCGGCTGATATAGGACACGCCACCGGTGACGATTTAACCCAAAAGACGCGTCCACGAGCGGTGGCCATTTTTGTGATTGGCTTTTGGATCTTGGATGTTGCTAACAACATGCTTCAGGGTCCATGCCGAGCTTTTCTCGGAGATCTTGCCGCTGGAGATCAGAAAAAGACCAGAACTGCCAATGCCTTTTATTCGTTCTTCATGGCCATTGGCAACGTTCTTGGCTATGCCGCTGGCTCCTATGATAAACTCCATCGTATTTTCCCGTTCACTGAAACCAAGGCGTGTGACGTGTTTTGTGCAAACCTGAAAAGTTGTTTTTTCTTCTCAATACTGCTCCTCCTTATTCTTTGTGCTATTGTTCTCACTTGCGTGGAGGATCCACAGTTAAAGCTCGGTTCTGGCAACACTAACAACGGTGAAAACCAAGACGTTCAAACTGGACTGTTGTGTTCATGTTTTGGTGAATTGGGTGCTGCCTTTAAGGAATTACAAAAACCAATGTTGATGTTGATGCTTGTAACCGCCATTAACTGGGTCGCATGGTTCCCTTATATGTTGTTCGATACTGATTGGATGGGTCGTGAGGTGTATGGCGGTGATGTGGGCAGTCCAGCATACAATGATGGTGTGCATGCAGGTTCATTGGGGCTCATGTTGAACTCAGTCGTTTTAGCTCTGATGTCATTGGCGGTGGAACCAATGGGTCGTCTTGTCGGAGGAGTTAAGTGGCTATGGGCAATCGTTAACGTTATCCTTGCCGTTGGCATGGCCATGACGGTGGTGATCACAAATGCTGCACGTAACGAACGGAGGCATGACGGCGTCATGGCTGGTCATCCTTCTACCGCTGTTAAAGCTGGCGCATTGAGTTTCTTCTCCGTCCTCGGAATCCCTCTAGCGATTACTTTCAGTGTTCCATTTGCTCTAGCATCTATATACTCCAGTGCTTCAGGTGCAGGCCAAGGTTTATCTTTGGGCGTCCTCAATGTTTCAATTGTCGTGCCTCAGATGATAGTATCAGCAATAAGTGGACAATGGGATAAATGGTTTGGTGGTGGTAACTTGCCGGCGTTTGTGTTGGGTGCGGTGGCTGCTGCCGTGAGTGCAGTGTTAGCTGTTATTCTGCTGCCAAATCCGAAGCCAGCAGATGAGAGCAAAGCTTCTGTTACCGTGGGGGGTTTCCATTAG 1524 0.4895 MEPSSSSLQVETAERKQSSPLRKMFAVSSIAAGIQFGWALQLSLLTPYVQTLGVPHAWSSFIWLCGPISGLVVQPIVGYTSDRCTSRFGRRRPFIMSGALAVAISVFLIGYAADIGHATGDDLTQKTRPRAVAIFVIGFWILDVANNMLQGPCRAFLGDLAAGDQKKTRTANAFYSFFMAIGNVLGYAAGSYDKLHRIFPFTETKACDVFCANLKSCFFFSILLLLILCAIVLTCVEDPQLKLGSGNTNNGENQDVQTGLLCSCFGELGAAFKELQKPMLMLMLVTAINWVAWFPYMLFDTDWMGREVYGGDVGSPAYNDGVHAGSLGLMLNSVVLALMSLAVEPMGRLVGGVKWLWAIVNVILAVGMAMTVVITNAARNERRHDGVMAGHPSTAVKAGALSFFSVLGIPLAITFSVPFALASIYSSASGAGQGLSLGVLNVSIVVPQMIVSAISGQWDKWFGGGNLPAFVLGAVAAAVSAVLAVILLPNPKPADESKASVTVGGFH 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14786g00001 507 Gene3D MFS general substrate transporter like domains 17 490 IPR036259 -
Vium14786g00001 507 CDD MFS_SLC45_SUC 24 467 - -
Vium14786g00001 507 PANTHER SUGAR TRANSPORTER 20 487 - -
Vium14786g00001 507 FunFam Sucrose transport protein 18 488 - -
Vium14786g00001 507 Pfam MFS/sugar transport protein 25 189 - -
Vium14786g00001 507 SUPERFAMILY MFS general substrate transporter 22 493 IPR036259 -
Vium14786g00001 507 NCBIfam sucrose/proton symporter 20 492 IPR005989 GO:0005886|GO:0008515|GO:0015770
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14786g00001 Vium-Chr14786 4291 6879 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14786g00001 5 507 Sucrose Transporter Gene Family AT1G22710 62.549 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14786g00001 K15378 - gmx:100785359 785.023