Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1477g00019 ATGGAACTGAGCTTGGATTTGAGCTTGGCCTTTGTCCCCGGAAGAACCGTTCGTCAGATTCTTGGCGAGGTTGCTCAGAACGAAGGTGGGTCTCAGAGAATGGCCACGCTTGAGGATTTTCTCCTAAAGTTGGAAGATGAGAAGAGAAAGATCGAGTCTTTCAAACGTGAACTTCCTCTTTGCATGGTCCTCGTGAACGATGCTGTTACTAAATTAAAAGAGGAGATAAACGGAGGTGTGAGAATGCAAGAAGCACCCGTGGTTGAAGAATATATGCCACTTTTGAAAACCAAATCTGAAGGAAGTGAGACTTTAAACATGGGTAAGGAACGCAGTAACATGAAGAATTGGATGAACTCTGTTCGGCTATGGAACGTTGAATCCAAACCGAGGACTGAAGAGGACGATCGATGTGTCCCCCACAATCCAAATCAACCACAGAATGAGACCAACAAGAGTAGAGGAGCAGCAGCAGCATTAAATGGAAACAATTGTGTCTTAAAAACAGTGATGAGTGAAGACAAGAGGGTGTCACAGGCTCCTAGCCATGGTTTGATGAGACCAGTGTTTGAATCGAATGATAGAAAAGCGGAAAGTAGTAATGAACATGGGTCGTCCTTGATGACAACAAGCTCATTAGAGATAAAGGGTCAAGCACAACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAACTTCATAGGCGATTCGTCGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATCAGAGAACTGATGCAGGTGGTAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAGAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTGTTCGGTTGAGGTAGCTAATGGTGGGTTATGCCTTATGGTAAAGGATAAACATGGAGATAATAATAAATCAAAAGGGAACTTATCACAATCTGGCTCTCCACAAGGTCCTCTTTTCTTAGGAGGGTCTGGACGCAACAGCATGGACACAGAAGAAGATGAACAATCAGATTGCCATAATTGGAAAGGTGCTCTTCACCACCAACCAGAAGCTGAACTTCTATGA 1089 0.4444 MELSLDLSLAFVPGRTVRQILGEVAQNEGGSQRMATLEDFLLKLEDEKRKIESFKRELPLCMVLVNDAVTKLKEEINGGVRMQEAPVVEEYMPLLKTKSEGSETLNMGKERSNMKNWMNSVRLWNVESKPRTEEDDRCVPHNPNQPQNETNKSRGAAAALNGNNCVLKTVMSEDKRVSQAPSHGLMRPVFESNDRKAESSNEHGSSLMTTSSLEIKGQAQPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQKYRLHFRRPQVCSVEVANGGLCLMVKDKHGDNNKSKGNLSQSGSPQGPLFLGGSGRNSMDTEEDEQSDCHNWKGALHHQPEAELL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1477g00019 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 284 IPR017930 -
Vium1477g00019 362 Coils Coil 37 57 - -
Vium1477g00019 362 MobiDBLite consensus disorder prediction 141 155 - -
Vium1477g00019 362 MobiDBLite consensus disorder prediction 202 229 - -
Vium1477g00019 362 SUPERFAMILY Homeodomain-like 225 285 IPR009057 -
Vium1477g00019 362 MobiDBLite consensus disorder prediction 309 362 - -
Vium1477g00019 362 MobiDBLite consensus disorder prediction 128 155 - -
Vium1477g00019 362 Gene3D - 226 284 - -
Vium1477g00019 362 MobiDBLite consensus disorder prediction 335 362 - -
Vium1477g00019 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 349 IPR044787 GO:0003700|GO:0006355
Vium1477g00019 362 FunFam Myb family transcription factor 226 284 - -
Vium1477g00019 362 Pfam Myb-like DNA-binding domain 229 280 IPR001005 -
Vium1477g00019 362 MobiDBLite consensus disorder prediction 176 232 - -
Vium1477g00019 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 282 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1477g00019 Vium-Chr1477 120529 123034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1477g00019 1 302 G2-like Transcription Factor Family AT2G03500 37.846 8.72e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium1477g00019 Myb_DNA-binding 8.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1477g00019 - - gmx:100794220 405.986