Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1477g00018 ATGGAACTGAGCTTGGATTTGAGCTTGGCCTTTGTCCCCGGAAGAACCGTTCGTCAGATTCTTGGCGAGGTTGCTCAGAACGAAGGTGGGTCTCAGAGAATGGCCACGCTTGAGGATTTTCTCCTAAAGTTGGAAGATGAGAAGAGAAAGATCGAGTCTTTCAAACGTGAACTTCCTCTTTGCATGGTCCTCGTGAACGATGCTGTTACTAAATTAAAAGAGGAGATAAACGGAGGTGTGAGAATGCAAGAAGCACCCGTGGTTGAAGAATATATGCCACTTTTGAAAACCAAATCTGAAGGAAGTGAGACTTTAAACATGGGTAAGGAACGCAGTAACATGAAGAATTGGATGAACTCTGTTCGGCTATGGAACGTTGAATCCAAACCGAGGACTGAAGAGGACGATCGATGTGTCCCCCACAATCCAAATCAACCACAGAATGAGACCAACAAGAGTAGAGGAGCAGCAGCAGCATTAAATGGAAACAATTGTGTCTTAAAAACAGTGATGAGTGAAGACAAGAGGGTGTCACAGGCTCCTAGCCATGGTTTGATGAGACCAGTGTTTGAATCGAATGATAGAAAAGCGGAAAGTAGTAATGAACATGGGTCGTCCTTGATGACAACAAGCTCATTAGAGATAAAGGGTCAAGCACAACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAACTTCATAGGCGATTCGTCGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATCAGAGAACTGATGCAGGTGGTAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAGTACAGACTTCATTTTAGAAGACCTCAAGTTTGTTCGGTTGAGGTAGCTAATGGTGGGTTATGCCTTATGGTAAAGGATAAACATGGAGATAATAATAAATCAAAAGGGAACTTATCACAATCTGGCTCTCCACAAGGTCCTCTTTTCTTAGGAGGGTCTGGACGCAACAGCATGGACACAGAAGAAGATGAACAATCAGATTGCCATAATTGGAAAGGTGCTCTTCACCACCAACCAGAAGCTGAACTTCTATGA 1086 0.4448 MELSLDLSLAFVPGRTVRQILGEVAQNEGGSQRMATLEDFLLKLEDEKRKIESFKRELPLCMVLVNDAVTKLKEEINGGVRMQEAPVVEEYMPLLKTKSEGSETLNMGKERSNMKNWMNSVRLWNVESKPRTEEDDRCVPHNPNQPQNETNKSRGAAAALNGNNCVLKTVMSEDKRVSQAPSHGLMRPVFESNDRKAESSNEHGSSLMTTSSLEIKGQAQPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIRELMQVVGLTNDEVKSHLQYRLHFRRPQVCSVEVANGGLCLMVKDKHGDNNKSKGNLSQSGSPQGPLFLGGSGRNSMDTEEDEQSDCHNWKGALHHQPEAELL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1477g00018 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 348 IPR044787 GO:0003700|GO:0006355
Vium1477g00018 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 284 IPR017930 -
Vium1477g00018 361 Coils Coil 37 57 - -
Vium1477g00018 361 MobiDBLite consensus disorder prediction 141 155 - -
Vium1477g00018 361 MobiDBLite consensus disorder prediction 202 229 - -
Vium1477g00018 361 MobiDBLite consensus disorder prediction 308 361 - -
Vium1477g00018 361 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 280 IPR006447 GO:0003677
Vium1477g00018 361 MobiDBLite consensus disorder prediction 334 361 - -
Vium1477g00018 361 MobiDBLite consensus disorder prediction 128 155 - -
Vium1477g00018 361 Gene3D - 226 283 - -
Vium1477g00018 361 SUPERFAMILY Homeodomain-like 225 280 IPR009057 -
Vium1477g00018 361 Pfam Myb-like DNA-binding domain 229 278 IPR001005 -
Vium1477g00018 361 MobiDBLite consensus disorder prediction 176 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1477g00018 Vium-Chr1477 120529 123039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1477g00018 1 280 G2-like Transcription Factor Family AT4G37180 37.153 1.73e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium1477g00018 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1477g00018 - - gmx:100794220 399.438