Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1477g00017 ATGACCCCATGCGGCGCATGCAAGTACCAACGGCGGAGGTGCGGATCGGATTGCGTGATGGTGTCGTATTTCCCGGCTGAGAGCATTCAGCGGTTCGCGTACGTGCACCATGTGTTCGGCGGGGGAAACGTCAGTAACATTTTGAGGTCGACGTCGCCGGATTTGAGGAAGTGGGTGGCGAGGGCGCTGGCGTACCAAGCGGAGGCGCGTGTGAGAGACCCGGTGCACGGGTGCGTGGGGTTGATATGGGAGCAGGAGGAGACTCTGGGAATCCTGAAAGAGAAGCTGGAGAAAGCGAAAAGGGAACTGGCCCAATACGTGGGCCCCCATGTTATGCAAAAGATGATTGGGCAGTGTTCCTCCGATCCGCATGCGAAGACGGTGGACCTTAAGGCTCCTCTCTCTGCCCCCGTTGATTTTGATCTTTCTTCATGGGATCCTTTTCCGGCTTGGGAATCTTCTTCCTCACGCCGCCTGCCACCATCTCAAGCTGACGCTAAGGGTAAGACCATTGCTCCTCCTTCTTGA 528 0.5701 MTPCGACKYQRRRCGSDCVMVSYFPAESIQRFAYVHHVFGGGNVSNILRSTSPDLRKWVARALAYQAEARVRDPVHGCVGLIWEQEETLGILKEKLEKAKRELAQYVGPHVMQKMIGQCSSDPHAKTVDLKAPLSAPVDFDLSSWDPFPAWESSSSRRLPPSQADAKGKTIAPPS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1477g00017 175 Coils Coil 82 102 - -
Vium1477g00017 175 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Vium1477g00017 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 116 - -
Vium1477g00017 175 MobiDBLite consensus disorder prediction 151 175 - -
Vium1477g00017 175 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1477g00017 Vium-Chr1477 114318 115112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1477g00017 2 116 AS2 family AT5G66870 46.957 4.92e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium1477g00017 LOB 5.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1477g00017 - - gmx:102663028 176.407