Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1477g00016 ATGTCGTCGCTGAATTCGCCGTGCGCTGCGTGCAAGCTTCTGCGCCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCCAGCAACGTGTCGAAGCTGCTGAACGAGCTCAGCGTGGCGCAGCGCGACGACGCCGTTAAGTCGCTGGCGTATGAGGCGGAGGCGCGATTGCGTGACCCCGTGTATGGCTGTGTGGGAATAATTTCGTTACTACAGCAACGGCTCCGCCAAATCCAGATGGAGCTTCAGAGCGCGAAGAAGGAATTGTCCACTTATGTGAGTCCTCAGACTATGCAGATTCTCTTGGCCAATCCTGGGATGGTGCCATCAGCTGATATTGTCGTGCCTCCCTCGCATCAACCTCTGTTCAATCATGTTGGCAACAACATGGCGCCGCAGCAGATTTTGGTTGGCCATGGCGGTGGCCAGACGATGGTTCGCGACCCTCAGCAGCAGGATTTTCAAGAAGCTCAGCAGATAGCCCTTGCAACTAGGGAGCAGCAACAACAGATGTTTAGAAACTATGAGCAGAAAGTGTTCGGTGGTTTTGAACCTAGTAATGGTGGATTTGGGACTCAAGGAGAATTGTTGTCTCCTTTGGCTCTTGGAAATTTTGGTAATGTTGGCGCTTACCAAATGCAGCAGCTAGGGGAACAACATCTCATTGAATCACAGTTGCTCCTCTCGCCACAGCAGGGACAGCCCCATCAGCAGCAACAGTGTGAAAGTGAGGATACAAAGAATGTGCTTGATTTTTCAGTCAAGTAG 822 0.5353 MSSLNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGIISLLQQRLRQIQMELQSAKKELSTYVSPQTMQILLANPGMVPSADIVVPPSHQPLFNHVGNNMAPQQILVGHGGGQTMVRDPQQQDFQEAQQIALATREQQQQMFRNYEQKVFGGFEPSNGGFGTQGELLSPLALGNFGNVGAYQMQQLGEQHLIESQLLLSPQQGQPHQQQQCESEDTKNVLDFSVK 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1477g00016 273 Coils Coil 86 106 - -
Vium1477g00016 273 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vium1477g00016 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 186 - -
Vium1477g00016 273 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1477g00016 Vium-Chr1477 106541 107882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1477g00016 1 193 AS2 family AT5G66870 54.000 2.96e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium1477g00016 LOB 4.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1477g00016 - - vum:124826574 419.083