Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1477g00014 ATGTCGTCGCTGAATTCGCCGTGCGCTGCGTGCAAGCTTCTGCGCCGGAAGTGCACGCAGGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCCAGCAACGTGTCGAAGCTGCTGAACGAGCTCAGCGTGGCGCAGCGCGACGACGCCGTTAAGTCGCTGGCGTATGAGGCGGAGGCGCGATTGCGTGACCCCGTGTATGGCTGTGTGGGAATAATTTCGTTACTACAGCAACGGCTCCGCCAAATCCAGATGGAGCTTCAGAGCGCGAAGAAGGAATTGTCCACTTATGTGAGTCCTCAGACTATGCAGATTCTCTTGGCCAATCCTGGGATGGTGCCATCAGCTGATATTGTCGTGCCTCCCTCGCATCAACCTCTGTTCAATCATGTTGGCAACAACATGGCGCCGCAGCAGATTTTGGTTGGCCATGGCGGTGGCCAGACGATGGTTCGCGACCCTCAGCAGCAGGATTTTCAAGAAGCTCAGCAGATAGCCCTTGCAACTAGGGAGCAGCAACAACAGATGTTTAGAAACTATGAGCAGAAAGTGTTCGGTGGTTTTGAACCTAGTAATGGTGGATTTGGGACTCAAGGAGAATTTTACAAGTGGTATGTTTATGAGCCTATATGGGGAAGCTATAGGTGGGATGATTATGAACCTGTATGGGGAAGCTACAGGTGGTATGTTTATGAGGCTGTATGGAGAAGGTACAAGTGGTATGATTATGAACATGTATGGGAAGCTACAGGTGGTATGATTATGAACCTGTATGGGGAAGCTACAGGTGGTATGGTTATGAGCCTGTATGGGGAAGCTACAGGTGGTATGTTGTATATGTCTTGCGATGATCGTATAACTTTTGGTTATACGGGAGTAGATGTTGCAGATGCTCCAGATGCATGA 945 0.5143 MSSLNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGIISLLQQRLRQIQMELQSAKKELSTYVSPQTMQILLANPGMVPSADIVVPPSHQPLFNHVGNNMAPQQILVGHGGGQTMVRDPQQQDFQEAQQIALATREQQQQMFRNYEQKVFGGFEPSNGGFGTQGEFYKWYVYEPIWGSYRWDDYEPVWGSYRWYVYEAVWRRYKWYDYEHVWEATGGMIMNLYGEATGGMVMSLYGEATGGMLYMSCDDRITFGYTGVDVADAPDA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1477g00014 314 Coils Coil 86 106 - -
Vium1477g00014 314 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 179 - -
Vium1477g00014 314 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Vium1477g00014 314 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1477g00014 Vium-Chr1477 97039 99764 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1477g00014 1 193 AS2 family AT5G66870 54.500 7.38e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium1477g00014 LOB 6.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1477g00014 - - vum:124826574 647.891