Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1477g00012 ATGCGCTGGTTACCCACGCTTTCCTTCACGCCTTCCGCTTCCTCCTCGTCTTCCTCAGCCGCCTCCGCCGACCACCGCCGGAAGGTGTGGCTGTTCGGTAGTTCATCCAAGAAACGCGCCTGTCATGGCGAGAACGACGCCAGGTGGCACGATGACGATTCACCACCCTTCCCTTCCCCCGGCACACCTCAGCCCTTGCCCCTGCCGGAGCTCGCCGCTTCCTCAGCCGTTCTCCGCAGAGACGGTGAATGTCGTCTTCCCTCGCCCAAGGATGCTGCTACAGTCACCACCTCCACCGGCTGTCGGATGCGGAGTGTTTTTGCTGGCCAAGACACGAGAAAGAATATGGAACAGGCTGAAACTAGGTCATCGAGAATGGTGCATCAAGATTCGTGTGGTTGTTGTGAATGTGCTCGAGAGAATAGTAATACTAATAATAGTAACTTCGCGAGCATCCCTCGTAGGAGCAGTTTTTCAAGTATTCCCTTTGCAAGTCCTTCAATAATGAGTCCACAGAAAACAAAAAATGGTGAATCAGTGCCATATTATTATGCGAGTCCCAAAGGAAATCAGTTCTGGTCTGCACCAGAAATGTCTACCTGTGAAACAGGGTTGCTACCTCCTGCCTTCTTTGATTTATCCGTGTTGGGCACAGAAACTTCTCCCTCTCCCACCTCCCATCAAAGTCCACAGAGGAGAAGTCCCGGGCAACACACCAGAACCTTGAGTGGACCTCTATCTCCTTTACATTCCAAGTTATCACTCGAAATCTCAATGGTGCGCCGTGAAAGTACTGCCCCTCCTGTCAGTGTTCACCCCTTGCCCCTGCCTCCTGGGGCTCCCCTGCCCTCTCCATCGTCAGCTAGTACATTTTCCAATGCTAGATCAGAATCATTGCCAATGAAAAACCAATGGCAGAAAGGGAAACTTATTGGGCGTGGGACATTTGGAAGTGTTTATGTTGCAACCAATAGGGAAACCGGTGCATTATGTGCAATGAAGGAAGTGGAAATGTTTCCTGATGATCCAAAATCTGCTGAGTCTATAAAACAGTTAGAGCAGGAAATTAAAGTTCTTAGCCAGCTAAAGCATTCGAACATCGTGCAGTATTTTGGCAGTGAAATAGTTGAGGGCCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATACGTCCGTGAACATTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGACATATTCTATCTGGATTGGCTTATTTACATAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGACTCCGCTGGAGTTGTTAAACTTGCTGATTTTGGGATGGCTAAGCATCTAACTGGGTTCGAAGCTAATCTATCTTTGAGGGGAAGTCCGTACTGGATGGCTCCAGAGCTTTTGCAGGCTGTGATGCAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTCTGGGTTGTACCATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCTGCAGCTCTGTTTAAGGTTATGAAGGAAACCCCTCCTATTCCTGAAACATTGTTGCCCGAGGGTAAAGATTTCTTGAGGTGCTGCTTTATAAGGAATCCAGCAGAGCGGCCAGCAGCTGCAGTTTTACTAGAACATCGATTTTTGAAAAACTCTCAAAAGCCTGATGTTTCATCTCCCACTCAGTTGTATAATGGAACAGGCTTCATGGACAAACCACGTAGTCCCATCAAACAATTTGAATATAAACATGATCAGTTGTCAATCTCCTGTGCCAAAATTGCCAAGGTTAAAGCAGCTGACAGGCGTGGATTTCTCATTTCTTCGTTGGAAATTCTTCCTGCATCCTTGAACCAATAA 1911 0.4668 MRWLPTLSFTPSASSSSSSAASADHRRKVWLFGSSSKKRACHGENDARWHDDDSPPFPSPGTPQPLPLPELAASSAVLRRDGECRLPSPKDAATVTTSTGCRMRSVFAGQDTRKNMEQAETRSSRMVHQDSCGCCECARENSNTNNSNFASIPRRSSFSSIPFASPSIMSPQKTKNGESVPYYYASPKGNQFWSAPEMSTCETGLLPPAFFDLSVLGTETSPSPTSHQSPQRRSPGQHTRTLSGPLSPLHSKLSLEISMVRRESTAPPVSVHPLPLPPGAPLPSPSSASTFSNARSESLPMKNQWQKGKLIGRGTFGSVYVATNRETGALCAMKEVEMFPDDPKSAESIKQLEQEIKVLSQLKHSNIVQYFGSEIVEGRFYIYLEYVHPGSINKYVREHCGAITESVIRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGFEANLSLRGSPYWMAPELLQAVMQKDNSPDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAALFKVMKETPPIPETLLPEGKDFLRCCFIRNPAERPAAAVLLEHRFLKNSQKPDVSSPTQLYNGTGFMDKPRSPIKQFEYKHDQLSISCAKIAKVKAADRRGFLISSLEILPASLNQ 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1477g00012 636 MobiDBLite consensus disorder prediction 270 284 - -
Vium1477g00012 636 MobiDBLite consensus disorder prediction 216 248 - -
Vium1477g00012 636 MobiDBLite consensus disorder prediction 39 69 - -
Vium1477g00012 636 Pfam Protein kinase domain 306 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00012 636 ProSitePatterns Protein kinases ATP-binding region signature. 311 334 IPR017441 GO:0005524
Vium1477g00012 636 MobiDBLite consensus disorder prediction 1 26 - -
Vium1477g00012 636 MobiDBLite consensus disorder prediction 215 248 - -
Vium1477g00012 636 SMART serkin_6 305 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00012 636 MobiDBLite consensus disorder prediction 264 299 - -
Vium1477g00012 636 ProSiteProfiles Protein kinase domain profile. 305 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00012 636 MobiDBLite consensus disorder prediction 7 23 - -
Vium1477g00012 636 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 14 579 - -
Vium1477g00012 636 FunFam Mitogen-activated protein kinase kinase kinase 5 302 603 - -
Vium1477g00012 636 SUPERFAMILY Protein kinase-like (PK-like) 295 586 IPR011009 -
Vium1477g00012 636 MobiDBLite consensus disorder prediction 285 299 - -
Vium1477g00012 636 MobiDBLite consensus disorder prediction 39 53 - -
Vium1477g00012 636 Gene3D Transferase(Phosphotransferase) domain 1 301 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1477g00012 Vium-Chr1477 75001 80259 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1477g00012 97 604 MAP Kinase Kinase Kinase AT5G66850 58.879 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium1477g00012 Pkinase 5.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1477g00012 - - gmx:100790701 920.613