Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1477g00010 ATGGTGAGTTTTGCGGTAGCAACGTTGACGATTGTGGATGGTGGTCGTGGTGTGTACGACAGCGGCTGCAAGCTCCCTAATTTTATTCTCTTTCTCCAGGAAATTAAAGTTCTTAGCCAGCTAAAGCATTCGAACATCGTGCAGTATTTTGGCAGTGAAATAGTTGAGGGCCGGTTTTATATTTATCTGGAATATGTTCATCCTGGTTCAATTAATAAATACGTCCGTGAACATTGTGGTGCCATAACAGAATCTGTCATTCGGAATTTCACTCGACATATTCTATCTGGATTGGCTTATTTACATAGCAAAAAAACAATTCATAGGGACATCAAAGGGGCTAACTTGCTTGTTGACTCCGCTGGAGTTGTTAAACTTGCTGATTTTGGGATGGCTAAGCATCTAACTGGGTTCGAAGCTAATCTATCTTTGAGGGGAAGTCCGTACTGGATGGCTCCAGAGCTTTTGCAGGCTGTGATGCAAAAGGATAACAGCCCTGATCTTGCTTTTGCTATTGATATTTGGAGTCTGGGTTGTACCATCATTGAAATGTTCACAGGGAAGCCTCCTTGGAGTGAATATGAAGGAGCTGCAGCTCTGTTTAAGGTTATGAAGGAAACCCCTCCTATTCCTGAAACATTGTCGCCAGAGGGTAAAGATTTCTTGAGGTGCTGCTTTATAAGGAATCCAGCAGAGCGGCCAGCAGCTGCAGTTTTACTAGAACATCGATTTTTGAAAAACTCTCAACAGCCTGATGTTTCATCTCCCACTCAGTTGTATAATGGAACAGGCTTCATGGACAAACCACGTAGTCCCATCAAACAATTTGAATATAAACATGATCAGTTGTCAATCTCCTGTGCCAAAATTGCCAAGGTTAAAGCAGCTGACAGGCGTGGATTTCTCATTTCTTCGTTGGAAATTCTTCCTGCATCCTTGAACCAATAA 948 0.4241 MVSFAVATLTIVDGGRGVYDSGCKLPNFILFLQEIKVLSQLKHSNIVQYFGSEIVEGRFYIYLEYVHPGSINKYVREHCGAITESVIRNFTRHILSGLAYLHSKKTIHRDIKGANLLVDSAGVVKLADFGMAKHLTGFEANLSLRGSPYWMAPELLQAVMQKDNSPDLAFAIDIWSLGCTIIEMFTGKPPWSEYEGAAALFKVMKETPPIPETLSPEGKDFLRCCFIRNPAERPAAAVLLEHRFLKNSQQPDVSSPTQLYNGTGFMDKPRSPIKQFEYKHDQLSISCAKIAKVKAADRRGFLISSLEILPASLNQ 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1477g00010 315 SMART serkin_6 8 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00010 315 Gene3D Transferase(Phosphotransferase) domain 1 19 272 - -
Vium1477g00010 315 ProSiteProfiles Protein kinase domain profile. 1 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00010 315 SUPERFAMILY Protein kinase-like (PK-like) 29 260 IPR011009 -
Vium1477g00010 315 Pfam Protein kinase domain 31 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00010 315 PRINTS Tyrosine kinase catalytic domain signature 63 76 IPR001245 GO:0004672|GO:0006468
Vium1477g00010 315 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Vium1477g00010 315 PRINTS Tyrosine kinase catalytic domain signature 100 118 IPR001245 GO:0004672|GO:0006468
Vium1477g00010 315 PRINTS Tyrosine kinase catalytic domain signature 172 194 IPR001245 GO:0004672|GO:0006468
Vium1477g00010 315 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 33 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1477g00010 Vium-Chr1477 69328 73448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1477g00010 33 283 MAP Kinase Kinase Kinase AT5G66850 75.591 1.96e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium1477g00010 Pkinase 2.7e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1477g00010 - - vum:124826573 636.721