Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1477g00004 ATGGGTCTCTGCACTTCAAAGCCTCATGCAAATCCCACACTCTCCTCTTCTCCCAATTCCAACCCCCACTTCACAGACACCAATGCCGACGAACAATTACCCAAAAATCCTATTCCTACTCCAAAAAAATCTCCCCTTTTCCCGTTCTACACTCCGAGCCCGGCCCACCACTTTTTCTCCGGCAAGTCTCCGGCGCCGGCTACTCCCCGGCGGTTCTTCAAGCCTCCGTCGCCAGCGAAGCACATTCGGGCCGTGCTGGCCCGCCGTCATGGGTCTGTTAAGCCCAACGAAGCTAGCATCCCGGAAGATGAAGTGGTTGCTCTTGACAAGAACTTCGGATTCTCGAAACAGTTTGAGCAAAAGTTTGAGGTTGGGGACGAGGTTGGACGAGGACACTTTGGTTATACTTGTGCTGCCAAGTTCCTTAAGGGCCAACTCAAAGGCCAACACGTCGCCGTCAAGGTCATCCCTAAAGCCAAGATGACAACTGCAATTGCAATTGAGGATGTGAGGAGGGAGGTGAAGATATTGAGGGCTTTGACAGGACATAAAAATCTGATTCAGTTCCACGATGCGTATGAGGATAATGACAATGTCTACATAGTAATGGAGTTGTGCGAAGGAGGGGAGCTTTTGGACAGAATATTGTCGAGAGGAGGAAAATACACTGAGGAAGATGCTAAAGCTGTCATGATACAAATACTAAATGTTGTTGCGTTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTCAAACCAGAGAATTTCCTATTCACATCAAAAGAAGAGAACTCTGAGCTGAAGGCCATTGACTTTGGATTGTCAGATTTTGTCAAACCAGATGAAAGGCTTAATGACATTGTTGGTAGTGCATACTATGTGGCTCCTGAAGTTTTGCATAGAGCTTACAGTACAGAGGCTGATGTCTGGAGTGTTGGTGTGATTGCTTATATTTTACTATGTGGCAGTCGTCCATTTTGGGCACGGACTGAATCTGGGATATTCCGTGCCGTATTGAGAGCTACTCCAAGTTTTGATGAACCTCCATGGCCTTCTCTATCAGATGAGGCAAAGGATTTTGTTAAGAGACTTCTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCGCAGGCATTGAGTCATCCATGGATTAAAAATTATAAGGACGTAAAAGTGCCTTTGGATATTCTAGTGTTCAAGCTCATGAAGACATACATGCGTTCCTCCTCTCTACGAAAAGCAGCTTTAAGAGCTTTGTCTAAGACATTGGCTACCGAAGAGCTGCAGCATTTGAAGGAGCAGTTTGCACTTTTAGAGCCAAACAAAACTAACACTATTAGCTTGGAAAATATCAAAGCGGCCTTAATGAAACATGCAACAGATGCCATGAAGGAATCACGCATTCCAGATTTCCTGGCATCACTTAATGCATTGCAATATAGAAGGATGGCTTTTGATGAGTTCTGCGCAGCTGCACTTAGTGTTCATCAGCTTGAAGCACTTGACCGGTGGGAGCAACATGCACGCTGTGCCTATGAACTTTTTGAAAAGGATGGAAACAGAGCTATAGTCATTGAGGAACTGGCTTCGGAGCTTGGGCTTGGTCCGTCTGTCCCTGTTCATGCTGTTCTTCACGACTGGATTAGGCACACTGATGGAAAGTTGAGCTTCCTTGGATTTGTTAAGTTATTGCACGGTCCATCTCGAAGTCTTGCAAAACCTCACTAG 1728 0.4572 MGLCTSKPHANPTLSSSPNSNPHFTDTNADEQLPKNPIPTPKKSPLFPFYTPSPAHHFFSGKSPAPATPRRFFKPPSPAKHIRAVLARRHGSVKPNEASIPEDEVVALDKNFGFSKQFEQKFEVGDEVGRGHFGYTCAAKFLKGQLKGQHVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLIQFHDAYEDNDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKEENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSVGVIAYILLCGSRPFWARTESGIFRAVLRATPSFDEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALSHPWIKNYKDVKVPLDILVFKLMKTYMRSSSLRKAALRALSKTLATEELQHLKEQFALLEPNKTNTISLENIKAALMKHATDAMKESRIPDFLASLNALQYRRMAFDEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKPH 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1477g00004 575 SMART serkin_6 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00004 575 FunFam CDPK-related kinase 3 114 286 - -
Vium1477g00004 575 Gene3D - 402 493 - -
Vium1477g00004 575 ProSitePatterns Protein kinases ATP-binding region signature. 128 154 IPR017441 GO:0005524
Vium1477g00004 575 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Vium1477g00004 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 108 550 - -
Vium1477g00004 575 CDD STKc_CAMK 121 383 - -
Vium1477g00004 575 Gene3D - 409 563 - -
Vium1477g00004 575 SUPERFAMILY EF-hand 412 566 IPR011992 -
Vium1477g00004 575 Pfam Protein kinase domain 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00004 575 SUPERFAMILY Protein kinase-like (PK-like) 120 414 IPR011009 -
Vium1477g00004 575 FunFam CDPK-related kinase 1 421 493 - -
Vium1477g00004 575 ProSiteProfiles Protein kinase domain profile. 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00004 575 FunFam Calcium-dependent protein kinase SK5 294 389 - -
Vium1477g00004 575 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
Vium1477g00004 575 FunFam CDPK-related kinase 1 115 210 - -
Vium1477g00004 575 MobiDBLite consensus disorder prediction 1 45 - -
Vium1477g00004 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Vium1477g00004 575 Gene3D Transferase(Phosphotransferase) domain 1 211 397 - -
Vium1477g00004 575 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1477g00004 Vium-Chr1477 9925 14313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1477g00004 1 575 EF-hand Containing Proteins AT3G50530 73.259 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium1477g00004 Pkinase 1.1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1477g00004 K13412 - gmx:100803313 1080.09