Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1477g00003 ATGGGTCTCTGCACTTCAAAGCCTCATGCAAATCCCACACTCTCCTCTTCTCCCAATTCCAACCCCCACTTCACAGACACCAATGCCGACGAACAATTACCCAAAAATCCTATTCCTACTCCAAAAAAATCTCCCCTTTTCCCGTTCTACACTCCGAGCCCGGCCCACCACTTTTTCTCCGGCAAGTCTCCGGCGCCGGCTACTCCCCGGCGGTTCTTCAAGCCTCCGTCGCCAGCGAAGCACATTCGGGCCGTGCTGGCCCGCCGTCATGGGTCTGTTAAGCCCAACGAAGCTAGCATCCCGGAAGATGAAGTGGTTGCTCTTGACAAGAACTTCGGATTCTCGAAACAGTTTGAGCAAAAGTTTGAGGTTGGGGACGAGGTTGGACGAGGACACTTTGGTTATACTTGTGCTGCCAAGTTCCTTAAGGGCCAACTCAAAGGCCAACACGTCGCCGTCAAGGTCATCCCTAAAGCCAAGATGACAACTGCAATTGCAATTGAGGATGTGAGGAGGGAGGTGAAGATATTGAGGGCTTTGACAGGACATAAAAATCTGATTCAGTTCCACGATGCGTATGAGGATAATGACAATGTCTACATAGTAATGGAGTTGTGCGAAGGAGGGGAGCTTTTGGACAGAATATTGTCGAGAGGAGGAAAATACACTGAGGAAGATGCTAAAGCTGTCATGATACAAATACTAAATGTTGTTGCGTTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTCAAACCAGAGAATTTCCTATTCACATCAAAAGAAGAGAACTCTGAGCTGAAGGCCATTGACTTTGGATTGTCAGATTTTGTCAAACCAGGTATTTTCGGAGTCCTTTTATGCATTCTGCCTGTTTTTCAGTCCACTACTGTTTGGGTTAAAATTATAGTTTTTCATCGCCTTACAGATGAAAGGCTTAATGACATTGTTGGTAGTGCATACTATGTGGCTCCTGAAGTTTTGCATAGAGCTTACAGTACAGAGGCTGATGTCTGGAGTGTTGGTGTGATTGCTTATATTTTACTATGTGGCAGTCGTCCATTTTGGGCACGGACTGAATCTGGGATATTCCGTGCCGTATTGAGAGCTACTCCAAGTTTTGATGAACCTCCATGGCCTTCTCTATCAGATGAGGCAAAGGATTTTGTTAAGAGACTTCTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCGCAGGCATTGAGTCATCCATGGATTAAAAATTATAAGGACGTAAAAGTGCCTTTGGATATTCTAGTGTTCAAGCTCATGAAGACATACATGCGTTCCTCCTCTCTACGAAAAGCAGCTTTAAGAGCTTTGTCTAAGACATTGGCTACCGAAGAGCTGCAGCATTTGAAGGAGCAGTTTGCACTTTTAGAGCCAAACAAAACTAACACTATTAGCTTGGAAAATATCAAAGCGGCCTTAATGAAACATGCAACAGATGCCATGAAGGAATCACGCATTCCAGATTTCCTGGCATCACTTAATGCATTGCAATATAGAAGGATGGCTTTTGATGAGTTCTGCGCAGCTGCACTTAGTGTTCATCAGCTTGAAGCACTTGACCGGTGGGAGCAACATGCACGCTGTGCCTATGAACTTTTTGAAAAGGATGGAAACAGAGCTATAGTCATTGAGGAACTGGCTTCGGAGCTTGGGCTTGGTCCGTCTGTCCCTGTTCATGCTGTTCTTCACGACTGGATTAGGCACACTGATGGAAAGTTGAGCTTCCTTGGATTTGTTAAGTTATTGCACGGTCCATCTCGAAGTCTTGCAAAACCTCACTAG 1815 0.4529 MGLCTSKPHANPTLSSSPNSNPHFTDTNADEQLPKNPIPTPKKSPLFPFYTPSPAHHFFSGKSPAPATPRRFFKPPSPAKHIRAVLARRHGSVKPNEASIPEDEVVALDKNFGFSKQFEQKFEVGDEVGRGHFGYTCAAKFLKGQLKGQHVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLIQFHDAYEDNDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKEENSELKAIDFGLSDFVKPGIFGVLLCILPVFQSTTVWVKIIVFHRLTDERLNDIVGSAYYVAPEVLHRAYSTEADVWSVGVIAYILLCGSRPFWARTESGIFRAVLRATPSFDEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALSHPWIKNYKDVKVPLDILVFKLMKTYMRSSSLRKAALRALSKTLATEELQHLKEQFALLEPNKTNTISLENIKAALMKHATDAMKESRIPDFLASLNALQYRRMAFDEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKPH 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1477g00003 604 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Vium1477g00003 604 FunFam CDPK-related kinase 1 450 522 - -
Vium1477g00003 604 FunFam CDPK-related kinase 1 115 210 - -
Vium1477g00003 604 PANTHER SERINE/THREONINE-PROTEIN KINASE 108 579 - -
Vium1477g00003 604 Pfam Protein kinase domain 122 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00003 604 ProSitePatterns Protein kinases ATP-binding region signature. 128 154 IPR017441 GO:0005524
Vium1477g00003 604 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
Vium1477g00003 604 Gene3D - 431 592 - -
Vium1477g00003 604 ProSiteProfiles Protein kinase domain profile. 122 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00003 604 SUPERFAMILY EF-hand 441 595 IPR011992 -
Vium1477g00003 604 SMART serkin_6 122 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1477g00003 604 SUPERFAMILY Protein kinase-like (PK-like) 120 443 IPR011009 -
Vium1477g00003 604 FunFam Calcium-dependent protein kinase SK5 323 418 - -
Vium1477g00003 604 CDD STKc_CAMK 121 412 - -
Vium1477g00003 604 FunFam CDPK-related kinase 3 114 284 - -
Vium1477g00003 604 Gene3D Transferase(Phosphotransferase) domain 1 211 426 - -
Vium1477g00003 604 Gene3D - 453 522 - -
Vium1477g00003 604 MobiDBLite consensus disorder prediction 1 45 - -
Vium1477g00003 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Vium1477g00003 604 MobiDBLite consensus disorder prediction 8 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1477g00003 Vium-Chr1477 9924 14315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1477g00003 1 604 EF-hand Containing Proteins AT3G50530 74.173 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium1477g00003 Pkinase 2.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1477g00003 K13412 - gmx:100803313 1064.68