Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14762g00004 ATGGTAAGACGATTGCTTTCAAGGGCAAGTAGTGAGCAGAAGATTGACATTGAGCTTGGAAGAACGGGTGAGGAGAGATCTGGCTCACAGTACAAGGGAGTGAAGATCCATGGCGAAGTTCTTTTGGGATTTCTGTTCATCTGCATAGTCCAGTTTTCACATGCAGACACTGATCCCTCTGATGTTGCAGCAATAAATAACTTATATACTGCGTTGGGCAACCCTGTTCTTCCTAGGTGGGTTCCTAGTGGAGGTGACCCATGCGGACAAGGGTGGCAAGGTGTTCGATGTAATGGTTCAGTAATTCAAGAAATAACTCTGAATGGTGCAAACTTGGGAGGAGAACTGGGTGACAGCTTAGGAAGTTTTGTTTCTATCAGAGCAATAGTTCTAAACAACAATCACATTGGGGGAAGTATTCCATCCAGTTTGCCAGTCACTTTGCAACACTTCTTTCTATCAGATAACCAGTTCACTGGAAGTATTCCAGCCTCTTTATCCATGTTGGCTGAATTGACTGACATGTCTCTTAACAACAATCTTTTAACAGGAGAAATACCAGATGCATTTCAGTCTCTTACTCAATTGATCAATCTAGATTTATCTAATAATAATTTAAGTGGGGAATTGCCTCCATCTATGGAGAACTTGTCAGCTCTGACCAGCGTACATTTACAGAACAATAACCTCTCTGGGACCCTGGATGTTTTACAAGACCTTCCGCTGCGAGATTTGAATGTTGAGAACAATCAGTTTGTTGGACCCATACCCCCGAAGCTGTTAAGCATACCTAACTTCAGAAATGATGGAAACCTGTTTAATATTAATGTCAATGCTACTATAACCCCGGCACGTCCACCTCATTCTCCAGTGCCAGTATCGCCATCAGGAACTGTGGTTTCTGGGACTCCATCATCTGGACGTTTACCTACTAAACCTACTGATGGACCAACTGCAGCAAAGGAATCAAATTCTGTGAAATCGAAAAAGAATACCAAGAGGGTGGTTTGGATATCTATTTCTAGTATATTGATGTTTGTTATTGTAGTCCTGGGACTTCTTCTCTTTGTTCCAAGATGTAGTAGAAGAGAACAGGTTAACAAAAGTTCCAAGCAACATCAAGTGGGAAAATATGGAGGTGAAAGACAGAATCCTAGAGAATATGAGGGATTTGTCCAACCACCTAGTCAAACTGAGAAAGTACCAAAGGGTGCTGTTGTGAGGCCGAAAGGGGATCAAGAGGAGGCAAGGAGAATGAGGGCAATTCCAAAGCTACAAGGCGAGCAAGAGAAGAATGAACAAAGAATGGGAACAATCCCAAAGCTGTTAGATCATGAGATAGATATGAGTTCATTAGATGTATATTCCATGCCTTCTCCACCAGTACCTCCTCCACCTCCACCACTCCCTACTGAGAGTGTGATTGTTGAACCAACCTCATTCCACAAAGGGGCTAACTTCAATCCTCCCAAAAAAAGTCCAGTTCCTCCCACTTTTGCGAAAACTTTCACCATTGCAGCCCTACAACAATATACAAATAGCTTTTCTCAAGACAATCTTATAGGTTTAGGAATGCTGGGGACTGTGTATAAGGCAGAACTTCCTGATGGAAAGATACTTGCTGTGAAGAAACTAGACAAGAGAGTTTCTAATGACCAAACAGATGATGAGTTTCTTGATTTGATAAACAACATTGACAGAATCCGGCATGCAAATATTGTTGAGCTTATTGGATACTGTACCGAACATGGTCAAAGGCTTCTTATTTATGAGTACTGTAGTAATGGTTCATTGCAGGATGCACTCCATTCAGATGATGAATTCAAAACAAGACTGTCATGGAATGCTCGTATCCGGATAGCACTTGGTGCAGCTAGAGCCTTAGAGTACTTGCATGAGCAGTGTCAGCCACCTGTTGTACACAGAAATTTCAAGTCTGCTAACATTCTCCTTGATGATGATGTTTCTGTTCGTCTATCTGATTGTGGTTTGGCTCCATTAATAACTAAAGGTTTTGTAAGTCAGCTCTCAGGACAACTTCTAGCAGCTTATGGCTATGGAGCACCAGAGTTTGAGTCAGGAATTTACACATACCAGAGTGATGTTTACAGCTTTGGAGTGGTTATGTTAGAACTTTTGACAGGCCGTCAGTCCTACGACAAAACACGAGCTCGAGTGGAGCAGTTTCTGGTGAGGTGGGCTATTCCACAACTGCATGACATTGATGCATTATCAAAGATGGTTGATCCTTCTCTAAAAGGAGATTACCCTGCCAAATCATTGTCAAATTTTGCAGACATTATTTCTAGATGTGTTCAGTCGGAGCCAGAATTTAGGCCAGCAATGTCAGAAGTTGTCCTGTACTTGATAAATATGATCAGGAAGGAATCTCAGCAAAGTGAATCAAATGAATAA 2415 0.4182 MVRRLLSRASSEQKIDIELGRTGEERSGSQYKGVKIHGEVLLGFLFICIVQFSHADTDPSDVAAINNLYTALGNPVLPRWVPSGGDPCGQGWQGVRCNGSVIQEITLNGANLGGELGDSLGSFVSIRAIVLNNNHIGGSIPSSLPVTLQHFFLSDNQFTGSIPASLSMLAELTDMSLNNNLLTGEIPDAFQSLTQLINLDLSNNNLSGELPPSMENLSALTSVHLQNNNLSGTLDVLQDLPLRDLNVENNQFVGPIPPKLLSIPNFRNDGNLFNINVNATITPARPPHSPVPVSPSGTVVSGTPSSGRLPTKPTDGPTAAKESNSVKSKKNTKRVVWISISSILMFVIVVLGLLLFVPRCSRREQVNKSSKQHQVGKYGGERQNPREYEGFVQPPSQTEKVPKGAVVRPKGDQEEARRMRAIPKLQGEQEKNEQRMGTIPKLLDHEIDMSSLDVYSMPSPPVPPPPPPLPTESVIVEPTSFHKGANFNPPKKSPVPPTFAKTFTIAALQQYTNSFSQDNLIGLGMLGTVYKAELPDGKILAVKKLDKRVSNDQTDDEFLDLINNIDRIRHANIVELIGYCTEHGQRLLIYEYCSNGSLQDALHSDDEFKTRLSWNARIRIALGAARALEYLHEQCQPPVVHRNFKSANILLDDDVSVRLSDCGLAPLITKGFVSQLSGQLLAAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDKTRARVEQFLVRWAIPQLHDIDALSKMVDPSLKGDYPAKSLSNFADIISRCVQSEPEFRPAMSEVVLYLINMIRKESQQSESNE 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14762g00004 804 ProSiteProfiles Protein kinase domain profile. 515 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14762g00004 804 SUPERFAMILY L domain-like 57 265 - -
Vium14762g00004 804 Gene3D Phosphorylase Kinase; domain 1 488 592 - -
Vium14762g00004 804 MobiDBLite consensus disorder prediction 294 328 - -
Vium14762g00004 804 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 482 592 - -
Vium14762g00004 804 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 593 803 - -
Vium14762g00004 804 MobiDBLite consensus disorder prediction 364 416 - -
Vium14762g00004 804 Pfam Leucine rich repeat 172 230 IPR001611 GO:0005515
Vium14762g00004 804 Gene3D Transferase(Phosphotransferase) domain 1 593 804 - -
Vium14762g00004 804 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 58 284 - -
Vium14762g00004 804 Pfam Protein tyrosine and serine/threonine kinase 518 787 IPR001245 GO:0004672|GO:0006468
Vium14762g00004 804 Gene3D Ribonuclease Inhibitor 58 283 IPR032675 -
Vium14762g00004 804 SUPERFAMILY Protein kinase-like (PK-like) 490 789 IPR011009 -
Vium14762g00004 804 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 97 786 - -
Vium14762g00004 804 MobiDBLite consensus disorder prediction 283 328 - -
Vium14762g00004 804 Pfam Leucine rich repeat N-terminal domain 59 98 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14762g00004 Vium-Chr14762 9683 16398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14762g00004 47 800 Strubbelig Receptor Gene Family AT4G03390 59.302 0.0 854
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vium14762g00004 PK_Tyr_Ser-Thr 3.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14762g00004 - - gmx:100811490 1309.28