Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14760g00002 ATGGAGGGGTATAGAAGTAGGGTCAGGGAANACACCGTGCCACACTTCGCCTACTCCGACATCCTCGCCGCCACGAACGCTTTCTCCGCCGACACCTTCTTAGGCAAAGGCAGCCACGGCAGAGTCTACAAAGCCACCCTCCACGGCGGCGCGCTCATCGCTGCCGTCAAAAAAACCAACCCTTCTAAGGAGATAGAAATTCTCTCCCACCTCAAAAGCCCGCGCTTGGTCAACCTAATTGGCTTCTGCAACGACCGAACTAACTGCAACAATAACAAACTCATTGTTGTGGAGTATATGCCCAACGGTTCGCTCCACGACCTTCTCCACTCCACCAAAACGGTTGGGCCTCCCGGTTGGACAGCCCGTGTCCGGTTCGCGGTTCACGTCGCAAAAGCTGTTCGTTTTTTGCACTCGTCTGAACCTCCCGTTATTCACCGTGATATTAAATCGTCCAACGTGTTAATCGACGATAAGTGGAAAGCGCGACTCGGTGACTTCGGACTCGCGTTTCGAGGACACATGGCGGATTCTCGCGTGCCGCCAGCGGGGACGTTAGGGTACCTCGACCCGTGCTATCTTGCGCCGGGGGACTTGAGTCCCAAGAGCGATGTCTTCAGTTTTGGAATCTTGCTGCTGGAGATAGCGAGTGGGAGGCACGCGATTGACGTGAGGCACAGTCCGCCGTCGGTGTTGGATTGGGCGGTGCCGTTGGTCCGCCGTGGCCAGTTCCGGGATATTTGCGACCCCCGGATCGGGGTGCCGCCGAACATGGCAGCGTTCCGCAGGATGATGGTGCTAGCCGCGAGGTGTGTGACGTCAACGACGGAGAGTCGGCCGACGATTGCGGAGGTGGTGGAGTGTCTGACGGCGGTAAAGAAGAATTTTGACGCATCGCTGGTGTGGATGAGAATGATACGGCGCGTGGTGAAGGCGCGTGGCGATGATTGGGACAGGAGTGAGGAGTTTGTGAGATTAGTTAAAGGCGGGAGTAGAAAGAGTAGAAGGAATGGGAAGGTATCTAGCATGTTGGGTGTACAGTATGAGAATGGACCCGAAAATCACACGGTTAGGTCAAGATCCGTTGGTTCTGGTTTTTTCGGGGATGTGAAAATTAACTCGGTTATGGAAAGGTACCCTAACCAATTCGGGTTCGGGTATAGGAAGGTAAGGCTAAAGAGATCGATGTCTATGGGGCTTTTGAAACATTATGGTAATGAATCAAATACGTGTCATGAGAGGCATAACGATACTCATAACAATGATTACGTTAGAGTGAGTTCCACAGAGATGGAACTTTCAAAGTTGGGTATTGTGGATAAGAATTTGGACTAG 1335 0.5281 MEGYRSRVREXTVPHFAYSDILAATNAFSADTFLGKGSHGRVYKATLHGGALIAAVKKTNPSKEIEILSHLKSPRLVNLIGFCNDRTNCNNNKLIVVEYMPNGSLHDLLHSTKTVGPPGWTARVRFAVHVAKAVRFLHSSEPPVIHRDIKSSNVLIDDKWKARLGDFGLAFRGHMADSRVPPAGTLGYLDPCYLAPGDLSPKSDVFSFGILLLEIASGRHAIDVRHSPPSVLDWAVPLVRRGQFRDICDPRIGVPPNMAAFRRMMVLAARCVTSTTESRPTIAEVVECLTAVKKNFDASLVWMRMIRRVVKARGDDWDRSEEFVRLVKGGSRKSRRNGKVSSMLGVQYENGPENHTVRSRSVGSGFFGDVKINSVMERYPNQFGFGYRKVRLKRSMSMGLLKHYGNESNTCHERHNDTHNNDYVRVSSTEMELSKLGIVDKNLD 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14760g00002 444 SMART serkin_6 28 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14760g00002 444 SUPERFAMILY Protein kinase-like (PK-like) 13 291 IPR011009 -
Vium14760g00002 444 Pfam Protein kinase domain 31 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14760g00002 444 PANTHER OS01G0253100 PROTEIN 13 293 - -
Vium14760g00002 444 Gene3D Phosphorylase Kinase; domain 1 3 99 - -
Vium14760g00002 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Vium14760g00002 444 ProSiteProfiles Protein kinase domain profile. 28 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14760g00002 444 Gene3D Transferase(Phosphotransferase) domain 1 100 306 - -
Vium14760g00002 444 ProSitePatterns Protein kinases ATP-binding region signature. 34 58 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14760g00002 Vium-Chr14760 9723 11328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14760g00002 16 289 Receptor kinase-like Gene Family AT3G59420 39.519 1.28e-58 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium14760g00002 Pkinase 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14760g00002 - - vun:114194010 770.385