Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1475g00001 ATGCCTTTGTACGAGTTATACCGTCTGGCCAGAGAAAAGCTTGGTACAGAGAATAACAGCACACGTGCATCTGATCAATGTTCCTCACCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCTAGCCAGGGTCAGTCTAGTAAAGTTAGAAGGAGCCCATCTTGCAAGAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCCAAGGGTAGAGACAAAGATGTAGGATATGGTGCCAACTGGATTGGAAAATTTAGAGATTTAGACTCTGGATTGAATGAAATTTCAATGTCGGTGCCGTCCCGTGAAGTTGATTTCTGTCAAGACGAAGATGTGTTACCTTGGTTTGATTACCCAACAATGGATAGTTCCTTGCAACATGACTATGATTCTGATTTCCTCCCTGCCCCAACTAGCTTTACTCTATCGGATAAAAAAAGTAATAGCAGGATGGCTTTGAGGGATTCTCATAAAACTTCTGAAGAACAAGGGAATGCTTTCAAGGATTCTTCAGCTGAGCAGGTTGGAACTGTCGAGCCCAAAGCTAGCACCAATCAGTTATACCCTCCATCATTGCATCATTGTCAAACATCTTTTGTATCTTCAAGATCCAGAACATCAGATATAACTGAAAATAACAATACTAGTAATGCAAACCAGGATGCCACCTATGGCGAAATTACCAATTTTCTATCTTCCTCAAGTGATTTTTCTAGCCCAAAGGGGAAGAAGCAAGAGCCACCTCTGCCTGGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCTAGGCCTGCGGCAAAGGTAAGAGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGTCTTCAGCAAGATCAGACAGTATGGAAATTAAGAATAAAGATGCAGCTGCAACTAGCAGCAATCCTCCTGAATCAATTGTTATTGATTCAAGTGGTGAATGTCCGAAGGAACTGACTATTCACTGTCAGCAGAATGTGGATCAATCCAAGACAGATTTGAATACTTCACTGTCGAAAGCTGTTGAACAGAATGCCATTCTTTCTAAGCAGTCAGAGACTGCTTGTAATGAGAGTTCCACTAAGATTGACCAAATTGCTGATCAAGTTCTTGGTGACAGTGGTGCTAAAGGGCAGACAACTGCTGAAAATAGTATGGAGGCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCTGATAGAGGTTCAGATGAGCCAAATAAAAATTTGAAGCGAAAAAGAAAAGACACCGATGATTCTGAGTGCCACAGTGAAAAGACATTTTACATGAAGGATGCTGAAGAAGAATCAGCGGGTGTTAAAAAGGCATCTGGAGGGCGTGGAGGTACAGGTTCCAAGAGAACCCGTGCAGCTGAAGTGCATAACCTATCTGAAAGGAGGCGAAGGGACAGAATCAACGAGAAGATGCGTGCGTTGCAAGAACTCATTCCAAATTGCAATAAGGTGGATAAAGCCTCAATGCTAGACGAGGCAATCTAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCACCACATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGGGTGGGAATGCCCGACATGAATGGTGGATCTTCAAGATTCCCTATGATTCAGGTGCCCCAGATGCAAGGAAATCATATCCCTGTCGCCCAAATGTCTGGACCTACTGCTTTACATGAGATGGCCGGATCAAATCTTCCAAGGCTCGGGCTTCCTGGACAAGTACATCCCATGCCAATGCCTCGAGCTCCCATGCTGCCGTTTTCTGGAGGACCTGTCATGAACTCATCAGCTCTGGGACTACATGCTTGTGGATTGTCAGGACTTGTTGAAACCGTGGATACAGCTTCTGCATCTGGCTTAAAGGATCAAATGCCAAACGTTGGCCCACTAGTTAAGCAAAGCACTGGTGGCCGTGACTCAACAAGTCAGATGCCTACACAGAGTGAAACAGCTGTTGTTGGATTTGAGCAATCTGCTATGGTTCATAACAGCGGTCATACCTCTGGGGCTAATGACAATGGAGCTCTTAATCCTTGTCCCAGCAGATAA 2184 0.4414 MPLYELYRLAREKLGTENNSTRASDQCSSPENDFFELVWENGQISSQGQSSKVRRSPSCKSLPSHCLPSHSPKGRDKDVGYGANWIGKFRDLDSGLNEISMSVPSREVDFCQDEDVLPWFDYPTMDSSLQHDYDSDFLPAPTSFTLSDKKSNSRMALRDSHKTSEEQGNAFKDSSAEQVGTVEPKASTNQLYPPSLHHCQTSFVSSRSRTSDITENNNTSNANQDATYGEITNFLSSSSDFSSPKGKKQEPPLPGNGSSSTIMNFSHFARPAAKVRANLQNIGLKSGLSSARSDSMEIKNKDAAATSSNPPESIVIDSSGECPKELTIHCQQNVDQSKTDLNTSLSKAVEQNAILSKQSETACNESSTKIDQIADQVLGDSGAKGQTTAENSMEAAVASSSVCSGNGADRGSDEPNKNLKRKRKDTDDSECHSEKTFYMKDAEEESAGVKKASGGRGGTGSKRTRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIXYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAPHMAPFSPMGVGMHMGYGMGYGVGMPDMNGGSSRFPMIQVPQMQGNHIPVAQMSGPTALHEMAGSNLPRLGLPGQVHPMPMPRAPMLPFSGGPVMNSSALGLHACGLSGLVETVDTASASGLKDQMPNVGPLVKQSTGGRDSTSQMPTQSETAVVGFEQSAMVHNSGHTSGANDNGALNPCPSR 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1475g00001 727 MobiDBLite consensus disorder prediction 381 465 - -
Vium1475g00001 727 Pfam Helix-loop-helix DNA-binding domain 469 515 IPR011598 GO:0046983
Vium1475g00001 727 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 525 IPR036638 GO:0046983
Vium1475g00001 727 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Vium1475g00001 727 MobiDBLite consensus disorder prediction 413 450 - -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 149 263 - -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 704 727 - -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 46 77 - -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 46 65 - -
Vium1475g00001 727 FunFam Basic helix-loop-helix transcription factor 460 523 - -
Vium1475g00001 727 Gene3D - 460 523 IPR036638 GO:0046983
Vium1475g00001 727 CDD bHLH_AtPIF_like 465 527 IPR047265 -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 169 245 - -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 381 407 - -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 293 315 - -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 152 168 - -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 705 727 - -
Vium1475g00001 727 SMART finulus 471 520 IPR011598 GO:0046983
Vium1475g00001 727 MobiDBLite consensus disorder prediction 673 690 - -
Vium1475g00001 727 PANTHER TRANSCRIPTION FACTOR PIF3 1 689 IPR044273 GO:0003700|GO:0006355
Vium1475g00001 727 MobiDBLite consensus disorder prediction 293 318 - -
Vium1475g00001 727 MobiDBLite consensus disorder prediction 664 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1475g00001 Vium-Chr1475 1865 6066 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1475g00001 1 594 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.545 2.04e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1475g00001 HLH 5.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1475g00001 K12126 - gmx:100794974 1122.46