Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vium1474g00004 | ATGCTTAGTGGAGTTGAGAAGAACTTAAAGAATGGCACTCACTTGCGAGGTGACATTAACATGATGATGGTTGGTGACCCCTCCGTTGCCAAGTCTCAACTCTTGAGAGCAATTATGAACATTGCTCCCTTGGCCATATCAACTACAGGCAGGGGTTCTTCTGGGGTTGGTTTGACAGCCGCTGTTACTTCAGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCCGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAGATGAATGATGAAGATCGTGTTGCTATACATGAAGTTATGGAGCAGCAGACTGTGACTATTGCTAAAGCTGGTATCCATGCATCACTAAATGCCCGATGCAGTGTGGTTGCCGCTGCAAATCCCATATATGGAACTTATGATCGTTCATTGACTCCAACTAAAAATATTGGACTTCCAGACTCCTTGCTTTCTCGATTTGATCTACTGTTTATTGTGTTAGATCAAATGGATCCTGACATTGATCGTCGAATTTCTGAGCATGTACTTCGTATGCATAGATTTCGTTCTGCTGTTGATGGAGGCGAGGCAACACTTAATGGGAGCTCAGGATATGGAAGAGAAGATGAAGCTGATACGGACTCGTCGATCTTTGTCAAATATAACAGAATGTTACATGGGAAGAAAACTGAAAGAGGTCGCAAACGTGATACTCTTACAATTAAGTTTCTTAAGAAATATATCCACTACGCTAAGCATAGGATTCAACCTGAACTGACTGATGAGGCGTCTGAGAACATTGTCACAGCCTATGCTGAGCTCAGAAATGCAAGCTCAAATGCAAAGACAGGAGGAACACTTCCCATAACTGCCAGAACCTTAGAAACCGTCATACGTCTCTCAACAGCTCATGCCAAACTAAAATTGAGCAGAAAGGTTTCAAAGTCTGATGTTGAAGCTGCTTTAAAGGTTTTAAATTTTGCAATATATCACAAAGAACTTACAGAAATGGAGGAGCGAGAGCAAGAGAGGGAGAAAGAGCAAGACAGGAAGCGCAAGGCTGATCATAATGAAAATGATGGTCCTGATCGTGGTTCTAAAGATAGAAGATCAACATTAGGAACAGATGCCATTGAAGTAGATGATACCCCAGCAGCTGAAGCTAATGTTGGACTCACCCCTGCAAGAATTGAAGCATTTAATTCTCTATTTGGTCAGCATATGCGAGCCAACCGCCTGGATCTCATAGCTATTGCAGACTTAGAGAATGTTATCAACAGAGGGGCAGATTCACCTTACACCGCTGCAGATATACTATTCCTATTAGAGAGGTTGCAAGATGACAATAGAGTGATGATAGTTGATGGAATGGTGCATATGATATCATAA | 1386 | 0.4228 | MLSGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDEDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRRISEHVLRMHRFRSAVDGGEATLNGSSGYGREDEADTDSSIFVKYNRMLHGKKTERGRKRDTLTIKFLKKYIHYAKHRIQPELTDEASENIVTAYAELRNASSNAKTGGTLPITARTLETVIRLSTAHAKLKLSRKVSKSDVEAALKVLNFAIYHKELTEMEEREQEREKEQDRKRKADHNENDGPDRGSKDRRSTLGTDAIEVDDTPAAEANVGLTPARIEAFNSLFGQHMRANRLDLIAIADLENVINRGADSPYTAADILFLLERLQDDNRVMIVDGMVHMIS | 461 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vium1474g00004 | 461 | Coils | Coil | 329 | 358 | - | - | |
| Vium1474g00004 | 461 | Pfam | MCM AAA-lid domain | 242 | 325 | IPR041562 | - | |
| Vium1474g00004 | 461 | MobiDBLite | consensus disorder prediction | 336 | 375 | - | - | |
| Vium1474g00004 | 461 | ProSiteProfiles | MCM family domain profile. | 1 | 181 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium1474g00004 | 461 | Gene3D | - | 1 | 350 | IPR027417 | - | |
| Vium1474g00004 | 461 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 16 | 341 | IPR027417 | - | |
| Vium1474g00004 | 461 | MobiDBLite | consensus disorder prediction | 336 | 379 | - | - | |
| Vium1474g00004 | 461 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 177 | 187 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Vium1474g00004 | 461 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 144 | 154 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Vium1474g00004 | 461 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 316 | 331 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Vium1474g00004 | 461 | Pfam | MCM P-loop domain | 1 | 185 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium1474g00004 | 461 | SMART | AAA_5 | 17 | 170 | IPR003593 | GO:0016887 | |
| Vium1474g00004 | 461 | ProSitePatterns | MCM family signature. | 84 | 92 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Vium1474g00004 | 461 | SMART | mcm | 1 | 329 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium1474g00004 | 461 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 16 | 31 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium1474g00004 | 461 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 155 | 163 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium1474g00004 | 461 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 76 | 90 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium1474g00004 | 461 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 104 | 117 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium1474g00004 | 461 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 128 | 140 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Vium1474g00004 | 461 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 1 | 353 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vium1474g00004 | Vium-Chr1474 | 21250 | 24551 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vium1474g00004 | 1 | 264 | Core DNA Replication Machinery Family | AT5G46280 | 85.283 | 5.08e-155 | 450 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vium1474g00004 | K02541 | - | gmx:100791302 | 784.252 |