Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14737g00004 ATGGGAAGTAATAGCACTGAAAAGATTCCAATCAATACCAGTACTGAAAGTTCAGAAACCACTATCGAAATAAAGATTAAAACATTGGATTCTCAAACGTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCCCTGAAAGAACAGATTGCTTCTGTAACTGGAGTATTATCTGAAAGGCAACGCCTAATTTGCCAAGGAAAAGTTCTGAAGGATGATCAGCTCCTGTCTGCGTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGCGAGGCAACCTGACCTACCACCACCAGGAAGTCTGCCCAATCATTCAGTGACTGAACCGAATTCAAGCTCAAGCCTGACAGGCCTCAGTCACAGTAGTCAAGTAGCCCCTGGTGTTTTTATTGAGACTTTCAATGTGCCTTTTCAGGGAGACGGAGTTCCACCTGAAATCAATAGGATCGTTTCTGCAGTTCTAGGATCCATTGGACTTCAAAATTTTGCGAATGGTGAAGGGATTGACGTCAGGGAGCATGATTCCCAAGGCTCTGGGAGAATTTCAGGCTCTAGTGGGATATTTGATTCATCTCATCCTCAACCCGAACAATCGGGTTTTCGGGTTTTGTCTGATAGATCACGTAATGCCTTTGGAGCTCCAGCTACAGTATCTCTAGGGTCTTTGCAGCCTCCTGTCATTCCTGATTCTTTAACAACTTTGTCCCAATATTTAAGTCACATAAGCAATGAATTTGATGCAATTGTGAGAGAAGGGGGGAATATTGCCCAAGCAGACGAGGCTCAAAGGAATATAGAAACTAGACCTGTTTCTTCACGTTCGGGTTCAGTTCTAGAAGGGTTTTCATCTCCGACATTGTTGGCAGAGGTTCTGCTTTCTACCAGACGAATGATTGTTGAACAAGCAGGCGAATGCCTACTTCAAATATCAAGGCAGATGGAGAATCAAGCGGATGTAACTGATCCATTGTTGCGGTCAAGCATTCAGTCTAGGGCTTTGAGGACTGGAGTTTTGTTTTATAACCTTGGTGCATTTTTACTCGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACATCGTCTGAAGCTGTAGTTAATGGAGGGCCTGCAGTCTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGAACAAGCTTTGGCGCTGTTCCTGTTGGAGCTGCACAGTCTAGCTCAAGTTTAGGTAGTGGACTTGGTTCAAGCTTTTTCCCTAGGCGTATAGATATACAGATACGACGAGGTACCTCATCAACATCATCCAATACCACCAATCAAGAAGAACGCAATGATACACAACCTGCCTCAGTACAAAGAAATCCAGGTGAAAATCCTGTTAATCAGGCAACCTCCAGGCGTCCAGATGCTTCTTTTTCTGGGGAACCAGGAGTAAGGTTAGTGCCTATTAGAACCATGGTTGCAGCAGCAGTACCGGGTCCCGTGGTCCGTCCGCCTTCAGAATCATCTGGTAATTCTCTAGGTCTTTACTATCCAATTCTTGGGAGATTTCAACATGTGTCGTCTTCTGGACATGTAAATAGTGAACAGAGATCTCAACATTCAAGTCAGCATCATGCTGCAGTGCCATCAACTACTGATTCCATGTTGGAAAGGCAAAGCACAGATGATTCTACAAGGAATGTAGGATCCTTATCAACTCAAAGCACAAGACCGGAGCCATCTAATTCTCGTGTTGTAAATATCAATATTCTGGCTGCCAGTGGACCCCAAAACAACCAAGAACCTGAGCGACAAATACCAAGCAGTGTACTTCAGTTATTAAGGTCACTCTTTCCTGGTGGAGAAATTCATGTGGAAGATTCAAGTGTACAAGGAATAACTCCAGGTTCTGACTCAGATCATGCTGCAACATCAAGGGGGGCTGCCCAAGTCCCCGAAGCACAACCTAATGCCAGTGAAGAAGGAATATTTTTGTCAAATATGCTCCGTGAAATCATGCCAGTCATATCTCAACAAGTAGGGTCAGAGGGAAATCCTTCAGAAGATCATATGGCTCAAGCTTCTTCAACCCAGGTTGAAACTGATGTCGGGACATCACGCAGACCGAGTGATTCTGACTCAAGCCCCCCAAATCCAAAACGTCAAAAGATGGAGTGA 2169 0.4477 MGSNSTEKIPINTSTESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVARQPDLPPPGSLPNHSVTEPNSSSSLTGLSHSSQVAPGVFIETFNVPFQGDGVPPEINRIVSAVLGSIGLQNFANGEGIDVREHDSQGSGRISGSSGIFDSSHPQPEQSGFRVLSDRSRNAFGAPATVSLGSLQPPVIPDSLTTLSQYLSHISNEFDAIVREGGNIAQADEAQRNIETRPVSSRSGSVLEGFSSPTLLAEVLLSTRRMIVEQAGECLLQISRQMENQADVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTSSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGTSFGAVPVGAAQSSSSLGSGLGSSFFPRRIDIQIRRGTSSTSSNTTNQEERNDTQPASVQRNPGENPVNQATSRRPDASFSGEPGVRLVPIRTMVAAAVPGPVVRPPSESSGNSLGLYYPILGRFQHVSSSGHVNSEQRSQHSSQHHAAVPSTTDSMLERQSTDDSTRNVGSLSTQSTRPEPSNSRVVNINILAASGPQNNQEPERQIPSSVLQLLRSLFPGGEIHVEDSSVQGITPGSDSDHAATSRGAAQVPEAQPNASEEGIFLSNMLREIMPVISQQVGSEGNPSEDHMAQASSTQVETDVGTSRRPSDSDSSPPNPKRQKME 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14737g00004 722 MobiDBLite consensus disorder prediction 430 480 - -
Vium14737g00004 722 FunFam Large proline-rich protein BAG6 14 107 - -
Vium14737g00004 722 MobiDBLite consensus disorder prediction 430 472 - -
Vium14737g00004 722 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Vium14737g00004 722 MobiDBLite consensus disorder prediction 675 714 - -
Vium14737g00004 722 SMART ubq_7 22 93 IPR000626 GO:0005515
Vium14737g00004 722 MobiDBLite consensus disorder prediction 627 641 - -
Vium14737g00004 722 MobiDBLite consensus disorder prediction 92 121 - -
Vium14737g00004 722 MobiDBLite consensus disorder prediction 525 580 - -
Vium14737g00004 722 MobiDBLite consensus disorder prediction 179 202 - -
Vium14737g00004 722 SUPERFAMILY Ubiquitin-like 16 101 IPR029071 -
Vium14737g00004 722 MobiDBLite consensus disorder prediction 624 654 - -
Vium14737g00004 722 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Vium14737g00004 722 MobiDBLite consensus disorder prediction 673 722 - -
Vium14737g00004 722 MobiDBLite consensus disorder prediction 106 121 - -
Vium14737g00004 722 Gene3D - 14 105 - -
Vium14737g00004 722 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vium14737g00004 722 PRINTS Ubiquitin signature 53 73 IPR019956 -
Vium14737g00004 722 PRINTS Ubiquitin signature 74 95 IPR019956 -
Vium14737g00004 722 MobiDBLite consensus disorder prediction 171 202 - -
Vium14737g00004 722 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 10 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14737g00004 Vium-Chr14737 1440 18485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14737g00004 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 1.77e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14737g00004 K23390 - gmx:100783070 1108.2