Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1472g00002 ATGATTCTGCAAATACCATTTTTCGTCATCATCACGATGTTCATAACATTGCCTCCTATATATGCTCAGCCATATTATTATTATAACTTGCCATATTTTGAACTGCAAGATTCCAAAGAAGGGTATATTATAGCAAAACCTGGGTGTAGTTTCAGATGTGGAGGTGTTGACATCTCGTACCCTTTTGGAATGAAAGATCCGAAATGCTACGGAGGCAAGTGGTTTGAAGTAGAATGCAGAGAAACTTCCCGCGGCCAAAAACCCTTCCTAAAGTCTTTAAATCTGGAGGTGATGGGAGTTGGCTTGAATATGGTTCATATCAAGAATCCGATTTTCTATTGGAACTGCCCAGGCAGAAGAGCAACGCCAGAAGTAATAAACCTGAGAGGAAGCCCTTTTGTGTATTCCCCGGTAGCCAACACGTTTGTGGCCGTTGGTTGCAACAACCTTGCCTTTTTGCAGTCCAATGGGTCCACTGTTGCTTGTTGTGCGTCCATGTGTGATGACAGTGAAGAAGTCAATGAAAACTTCAACTTGGTAGGAAAATATGGTTGCAGTGGCAGGTACTGCTGTGAAACTTCACTGCCCAAGTATCTTTCAGAATATAACGCAACACTTCAACATTTTAACACCGAAAACAATAATACTGTGAGTGAACCGTGTACTTATGCGTTCATTGCATATCCATACTCGTACTGGCAAGATACGTTTTCGATTAACGATACGGATTATATTGAGGCAGTGCTTGAGTGGGAGATATTGGACAACACGCTTGACAATTCTACCCGTCAATCCCTTTCAGAATTAGATTGTAATCGCTCTAATGTTGGATCTTCGCAAAACACAAGCTCTGGTTGGAGATGCGACTGTTTAGAAGGCTTCTATGGCAATCCCTACGTTGCAGGAGGCTGCACTGCGATCCCAGGTTATTACAAGCACAGTCAAGCGAAGAAGTGGGCTATAGTAGGAGTTTCGTCAAGTCTGGGATCTATCATTTTTCTCCTTGGTCTATGGTTGTTGTATAAGGTTGCAAGGAAGAGAATGATAGAGAAACGTAAACAGAAGTTCTTCAAAAAGAATGGCGGTTTGTTGTTGCAACAAAGAATGTCATCTAATGAAGCTAATGTAGACAAAGCTATTCTCTTTAGCTTAGATGATTTAGAGAAAGCCACTGACAACTTTAACATGGATAGAGTTCTGGGAAAGGGAGGGCAAGGTACGGTTTACAAAGGAATGCTAGTAGATGGTAGAATTGTTGCAGTGAAAAAATTTAAGGTGGAAGGAAATATTGAAGAGTTCATCAATGAGTTTGTCATTCTGTCACAAATCAACAACAGAAATGTGGTCAAATTGTTAGGATGTTGTTTGGAGACAGAAATTCCCCTGCTTGTTTATGAATTCATTCCTAATGGTAATCTCTTTGAATATTTGCATGACCAGACAAAGGAGTTATTACCAATGACTTGGGAGATGTGTTTGAGAATTGCCACTGAGATCGCAGGAGCTCTCTTTTACCTGCACTCGGTTGCATCTAAACCCATTTATCATAGAGATATCAAATCCACAAATATACTATTGGATGAAAAGTATAGGGCAAAAATTGCAGATTTTGGAACATCCCGGGTAATTTCTATTGAAGCTACTCATCTTACAACAGTTGTTCAAGGTACCTTCGGTTATTTGGATCCTGAATATTTTCACACTAGTCAATTTACAGAGAAAAGTGATGTCTATAGTTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGCCAAAAGGCAATATCACCAGCAAGATCTGGAGAGTTCAAGAGTCTAGCATCATATTTTGTTGAGTGTCTGGAGGAGGACAATCTGTTTGACATTATTGACAAAAGAGTTATGAAAGAAGCAGAGAAGGGACAAATCATTGCCGTTGCTAATCTTGCAAATAGATGCTTAGAGTTGAATGGAAAGAAACGTCCAACTATGAAAGAGATCACACTTGAATTAGAAGGGATTCATGGGTTGGTCAGGAAGTGTAATGCAGAGAAAAAAGGTGACGAAGTTGAGCTTGCACGAGTTGGCATCCTTGGGATGGATATTCTACGTCAAAGTCATGGTACTCAAAAGGTTGTACCTATGGTACAATAA 2130 0.4005 MILQIPFFVIITMFITLPPIYAQPYYYYNLPYFELQDSKEGYIIAKPGCSFRCGGVDISYPFGMKDPKCYGGKWFEVECRETSRGQKPFLKSLNLEVMGVGLNMVHIKNPIFYWNCPGRRATPEVINLRGSPFVYSPVANTFVAVGCNNLAFLQSNGSTVACCASMCDDSEEVNENFNLVGKYGCSGRYCCETSLPKYLSEYNATLQHFNTENNNTVSEPCTYAFIAYPYSYWQDTFSINDTDYIEAVLEWEILDNTLDNSTRQSLSELDCNRSNVGSSQNTSSGWRCDCLEGFYGNPYVAGGCTAIPGYYKHSQAKKWAIVGVSSSLGSIIFLLGLWLLYKVARKRMIEKRKQKFFKKNGGLLLQQRMSSNEANVDKAILFSLDDLEKATDNFNMDRVLGKGGQGTVYKGMLVDGRIVAVKKFKVEGNIEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQTKELLPMTWEMCLRIATEIAGALFYLHSVASKPIYHRDIKSTNILLDEKYRAKIADFGTSRVISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKAISPARSGEFKSLASYFVECLEEDNLFDIIDKRVMKEAEKGQIIAVANLANRCLELNGKKRPTMKEITLELEGIHGLVRKCNAEKKGDEVELARVGILGMDILRQSHGTQKVVPMVQ 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1472g00002 709 Gene3D Phosphorylase Kinase; domain 1 359 467 - -
Vium1472g00002 709 Pfam Wall-associated receptor kinase galacturonan-binding 49 93 IPR025287 GO:0030247
Vium1472g00002 709 ProSiteProfiles Protein kinase domain profile. 394 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1472g00002 709 FunFam Wall-associated receptor kinase 2 364 467 - -
Vium1472g00002 709 FunFam Wall-associated receptor kinase 2 468 686 - -
Vium1472g00002 709 Gene3D Transferase(Phosphotransferase) domain 1 468 685 - -
Vium1472g00002 709 Pfam Protein tyrosine and serine/threonine kinase 395 662 IPR001245 GO:0004672|GO:0006468
Vium1472g00002 709 CDD EGF_Lam 285 305 IPR002049 -
Vium1472g00002 709 CDD STKc_IRAK 400 666 - -
Vium1472g00002 709 SUPERFAMILY Protein kinase-like (PK-like) 374 663 IPR011009 -
Vium1472g00002 709 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 45 671 IPR045274 GO:0007166
Vium1472g00002 709 SMART serkin_6 394 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1472g00002 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1472g00002 Vium-Chr1472 32964 38471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1472g00002 49 667 Receptor kinase-like Gene Family AT1G69730 44.872 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium1472g00002 PK_Tyr_Ser-Thr 8.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1472g00002 - - gmx:100798794 935.25