Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1472g00001 ATGATTCTGCAAATACAATTTTTCATCATCATGTTCATAACATTGCCTTCTATATATGCAGTGCCATATTTTGGACTGCAATATTTTTCAGATGGGCAAATTATAGCAAAACCTGGGTGTAGTTTCAGATGTGGAGGTGTTGACATCGCTTACCCTTTTGGAATGAAAGATTCGAAATGCTACGGAGGCAAGTGGTTTGAAGTAGAATGCAGAGAAACTTCCGACGGCCAAAAACCCTTCCTAAAGTCTTTAAATCTGGAGGTGATAGCAGTTGGCTTGAACGGGGTTTATATCAAGAATCCGATTTTCCATTGGAACTGCCCAGGCAGAAGAGCGACGCCAGAAGTAATAAACCTGAGAGAAAGCCCTTTAGTGTATTCCCAGGAAGCCAACAAGTTTGTGTCCGTTGGTTGCAACAACCTTGCCCTTTTGCAGTCCAATGGGTCCACTGTTGCTTGTTGTGCGTCCATTTGTGATGACAATGAAGAAGTCAACGATAACTTCAACTTGGTAAGAGAAGATGGTTGCAGTGGCAGGTACTGCTGTGAGACTTCACTGCCCAAGAATCTTTCAGAATATAACGCAACACTTGAACATTTTAACACCGAAAACAATAATACTGTGAGTGAACCGTGTACTTATGCGTTCATTGCATATCGATACCAGCCAGATACGTTTGGGCTTAACGATACGGATTATATTTATGCAATGCTTGAGTGGGAGATATTGGACAGCACGCTTGACAATTCTACCCGTCAACACCTTTCAGAATCAGATTACGTCACTTGTAATCGCTCTAATGTTGGATCTTGGCAAAATACAAGCTCTAGTTGGAGATGCCACTGCTTAGAAGGCTTCTATGGCAATCCCTACGTTGCAGGAGGCTGCACTACTGCCATCCCAGGTTATTACAAGCACAGTCAAGCGAAGAAGTGGACTATTGTAGGAGTTCCGTCAAGTCTGGGATCTATAATTTTTTTCCTTGGTCCATGGTTGTTGTATAAGGTTGCATGGAAGAGAGTGATAGAGAAACGTAAACAGAAGTTCTTCAAAAAGAATGGCGGTTTGTTGTTGCAACAAAGAATGTCATCTAATAATGTGGACAAAGCTATTCTCTTTAGCTTAGATGATTTAGAGAAAGCCACTGACAACTTTAACGTGGATAGAGTTCTGGGAAAGGGAGGGCAAGGTACGGTTTACAAAGGAATGCTAGTAGATGGTAGAATTGTTGCAGTGAAAAAATTTAAGGTGGAAGGAAATATTGAAGAGTTCATCAATGAATTTGTCATTCTCTCACAAATCAACAACAGAAATGTGGTCAAACTGTTAGGATGTTGTTTGGAGACAGAAATTCCCCTACTTGTTTATGAATTCATTCCTAATGGTAATCTCTTTGAATATTTGCATGACCAGACAAAGGAGTTATTACCAATGACTTGGGAGATGTGTTTGAGAATTGCCACTGAGATCGCAGGAGCTCTCTTTTACCTGCACTCGGTTGCATCTAAACCCATTTATCATAGAGATATCAAATCCACAAATATACTGTTGGATGAAAAGTATAGGGCAAAAATTGCAGATTTTGGAACATCCCGGGTAATTTCTATTGAAGCTACTCATCTTACAACAGTTGTTCAAGGTACCTTCGGTTATTTGGATCCTGAATATTTTCACACTAGTCAATTTACAGAGAAAAGTGATGTCTATAGTTTTGGAGTAGTTCTTGCTGAACTTTTAACAGGCCAAAAGGCAATATCACCAGCAAGATCTGGAGAGTTCAAGAGTCTAGCATCATATTTTGTTGAGTGTCTGGAGGAGGACAATCTGTTTGACATTATTGACAAAAGAGTTATGAAAGAAGCAGAGAAGGGACAAATCATTGCCGTTGCTAATCTTGCAAATAGATGCTTAGAGTTGAATGGAAAGAAACGTCCAACTATGAAAGAGATCACACTTGAATTAGAAGGGATTCATGGGTTGGTCAGGAAGTGTAATGCAGAGAAAAAAGGTGACGAAGTTGAGCTTGCACGAGTTGGCATCCTTGGGATGGATATTCTACGTCAAAGTCATGGTACTCAAAAGGTTGTACCTATGGTACAATAA 2103 0.4013 MILQIQFFIIMFITLPSIYAVPYFGLQYFSDGQIIAKPGCSFRCGGVDIAYPFGMKDSKCYGGKWFEVECRETSDGQKPFLKSLNLEVIAVGLNGVYIKNPIFHWNCPGRRATPEVINLRESPLVYSQEANKFVSVGCNNLALLQSNGSTVACCASICDDNEEVNDNFNLVREDGCSGRYCCETSLPKNLSEYNATLEHFNTENNNTVSEPCTYAFIAYRYQPDTFGLNDTDYIYAMLEWEILDSTLDNSTRQHLSESDYVTCNRSNVGSWQNTSSSWRCHCLEGFYGNPYVAGGCTTAIPGYYKHSQAKKWTIVGVPSSLGSIIFFLGPWLLYKVAWKRVIEKRKQKFFKKNGGLLLQQRMSSNNVDKAILFSLDDLEKATDNFNVDRVLGKGGQGTVYKGMLVDGRIVAVKKFKVEGNIEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQTKELLPMTWEMCLRIATEIAGALFYLHSVASKPIYHRDIKSTNILLDEKYRAKIADFGTSRVISIEATHLTTVVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGQKAISPARSGEFKSLASYFVECLEEDNLFDIIDKRVMKEAEKGQIIAVANLANRCLELNGKKRPTMKEITLELEGIHGLVRKCNAEKKGDEVELARVGILGMDILRQSHGTQKVVPMVQ 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1472g00001 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Vium1472g00001 700 Gene3D Phosphorylase Kinase; domain 1 350 458 - -
Vium1472g00001 700 Pfam Protein kinase domain 386 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1472g00001 700 SMART serkin_6 385 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1472g00001 700 Gene3D Transferase(Phosphotransferase) domain 1 459 676 - -
Vium1472g00001 700 Pfam Wall-associated receptor kinase galacturonan-binding 40 86 IPR025287 GO:0030247
Vium1472g00001 700 SUPERFAMILY Protein kinase-like (PK-like) 366 654 IPR011009 -
Vium1472g00001 700 ProSiteProfiles Protein kinase domain profile. 385 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1472g00001 700 FunFam Wall-associated receptor kinase 2 357 458 - -
Vium1472g00001 700 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 35 662 IPR045274 GO:0007166
Vium1472g00001 700 CDD STKc_IRAK 391 657 - -
Vium1472g00001 700 FunFam Wall-associated receptor kinase 2 459 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1472g00001 Vium-Chr1472 2942 10198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1472g00001 40 658 Receptor kinase-like Gene Family AT1G69730 43.795 2.39e-179 529
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vium1472g00001 Pkinase 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1472g00001 - - gmx:100798794 923.309