Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14729g00001 ATGAAGAGGGCAAGGGATGATATGTACTCTGCCTCTGCCTCTCAATTCAAACGCCCCCCTTTTTCTTCCTCGCGTGCTGATTCCTATGCACAAGTCCCTGGAAGTGGAGGGGGAGGGGGTGGAGGAGGTAGCAATGGAGGTGGTGTTGGTGGGGGAGCAACTACATCCCAGAAGCTGACTACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACAGCTGGTGTCATAGCAAGGGTGAAAGAATTGTTTAAAGGGCACAACAATTTGATTTTTGGATTTAACACATTCCTGCCTAAAGGTTATGAGATAACACTGGATGAGGATGAGGCTCCTCCCAAGAAAACAGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAACGGTTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGCGAGGTTTATAGTGAGGTTGCTACCCTCTTCAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCGGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGAAATTCATTGCAGCGCTTTAATGAGCGGAGTTCTACGGCCCCAATGATGCGCCAAATGCCACCAGACAAGGCACAACGTTATCGAAGAGAAAGACTTCCTTCTCATGATCATGATATGAGTGCTGAACGCCCTGAGATGGATGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAGCGAGACAATAGGGATAGGAGAATGCGTGATCAGGATGAGAGAGAACAAGATCTTGATAATAGCAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAAGCTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTTCCGAATTTCCTTCTTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGCTGAGCAGTTCTGATGATTACCAGACATTCTTGAAATGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGACGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAATCACTATCTACTGATGCTCATTTGGCAAGACCGTCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGAGCCAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGCAGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGGAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTACTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATTAATGAAAATAAAATCAGTGTGGAGACTCTGAACCGTATTGAAGAGCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTCTATGGTGATCATGGTCTTGACGTAATAGACATACTGCGGAAAAACCCAACCCATGCCCTTCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTGGATCATCGCAGCTTCTATTTCAAACAACAAGATTCTAAGAATTTGAGCACAAAATCTTTGGTTGCTGAGATTAAAGAAATTAAAGAAAAACAGCAGAAAGAAGATGATATTATTCAGTCTATCGCTGCTGGAAATAAACAGCCTCTAATTCCTCATTTGGAATTTGAATATCCTGATGCTGCTGGGATTCATGAAGACCTGTATAAACTTGTTCGATATTCATGTGAGGAGTTATTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTGTGGAGTACCTTTTTGGAGCCAATGCTTGGTGTTCCTACCCAGTCTCATGCAACAGAAAGGACAGAGGATAGAAAAACTGGGCATAATGTTCGAAATTTTGGTGTACCAAGCATAGGGGATGACAGAAGCCCTCACGGAGACTCTCTTTCAATGAATTCAAGGTTACCAAAATCTGATAAGAATGAAGCTGATGGTAGACTAACTGACGCAAAAAATGTTCACCGGGCTAATATGGCAACCGACGATAAAGAAAATGGATCTGTTGGTGGTGAACATGGTTGTAGGGATGATCCATTGATGGAGAAAGGACTGAAAAATGTAGAATGCAATGACAAAGCCTCCGGGTTTAGCAAACCATTTACCTCTGATGATCAAGGAGCTAAAAACAGTGTGTCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGGACCAACTTAGCTGCATCACCAGCGCGTGCCCTTACTCCATCACAACCAACTGATGTTGATGATTCTGTAGCCAAGTCTCAGGTTGCTAATGTACCATTGGTGGAGGGATGTGACATGGCAACTCCAGTACCTGTGGCCAATGGTGTTTTAAGTGAAAGCAGTAAAGTTAAAAATCACGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGAGAATTATCACCAAATGGTGACTCGGAGGAGGATAACTTTGTTGCCTACAGAGATTCAAATGTGCAGTCAATGGCTAAAGCAAAACACAACACTGAAAGAAGAAAGTATCAGTCTAGAAACGGAGAGGATGAATGTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCTGACGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTTCGGGAAGATCATGAAGAGGAGGAAGATATCGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGTGATGCACAAGCTGGAGGAGACGGCACATCTTTGCCATTGTCAGAAAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTATGAGAGGATCTTATCAGCAAAAAAAAATTCAATGAACGCGGAATTAAAATGGAAAGCAAAAGATGCTAGCTTACCGGATCCTTATTCAAGATTTATGAACGCATTGTACAATTTGTTGGATGGATCTGCTGAAAATGCAAAGTTTGAGGATGAATGCCGAGCAATTATAGGGAACCAATCATACGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTTAGACAGCTTCAAACTGTTGCAACTGACGAGGTCGACAGTAAGCTTCTCCAATTATATGAATATGAAAGGTCTCGGAAGCCTGGAAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCACGAGGATAATATATATCGGATACAATGTTCCTCTAGCCCCTCACGACTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAATTGTTTGCCGTTTCTATTGATCCAAATTTCTCCTTTTATCTGCACAATGATTTTCTATCTGTCTTTCCCGGCAAAAAGGAACCCCATGGCATCATACTGCACAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGACTTCTTCTTCCGGCCGAGAAAGAGGAGACGAACGCCGGCAGGGACAACAACCTCCCAGTTTCGTAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCGTAA 4176 0.4133 MKRARDDMYSASASQFKRPPFSSSRADSYAQVPGSGGGGGGGGSNGGGVGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNERSSTAPMMRQMPPDKAQRYRRERLPSHDHDMSAERPEMDDDKTMLNIHKERKRDNRDRRMRDQDEREQDLDNSRDLNLQRFPDKKKAVKKAEGFGMASEFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETLNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYPDAAGIHEDLYKLVRYSCEELFSSKELLNKIMRLWSTFLEPMLGVPTQSHATERTEDRKTGHNVRNFGVPSIGDDRSPHGDSLSMNSRLPKSDKNEADGRLTDAKNVHRANMATDDKENGSVGGEHGCRDDPLMEKGLKNVECNDKASGFSKPFTSDDQGAKNSVSIAIRGENSLNRTNLAASPARALTPSQPTDVDDSVAKSQVANVPLVEGCDMATPVPVANGVLSESSKVKNHDESAGPCKIEKEEGELSPNGDSEEDNFVAYRDSNVQSMAKAKHNTERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKKNSMNAELKWKAKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDSKLLQLYEYERSRKPGKLNDSVYHANAHVILHEDNIYRIQCSSSPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKISCNSSKISYVLDTQDFFFRPRKRRRTPAGTTTSQFRRDREERFRKLLACS 1391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14729g00001 1391 ProSiteProfiles PAH domain profile. 141 211 IPR003822 GO:0006355
Vium14729g00001 1391 SUPERFAMILY PAH2 domain 55 126 IPR036600 GO:0006355
Vium14729g00001 1391 SUPERFAMILY PAH2 domain 344 410 IPR036600 GO:0006355
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 433 455 - -
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 211 310 - -
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 937 958 - -
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 1039 1059 - -
Vium14729g00001 1391 ProSiteProfiles PAH domain profile. 57 127 IPR003822 GO:0006355
Vium14729g00001 1391 Pfam C-terminal domain of Sin3a protein 1111 1358 IPR031693 -
Vium14729g00001 1391 Coils Coil 547 567 - -
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 983 1002 - -
Vium14729g00001 1391 Pfam Sin3 family co-repressor 476 568 IPR013194 -
Vium14729g00001 1391 SMART hdac_interact2seq4b 474 574 IPR013194 -
Vium14729g00001 1391 SUPERFAMILY PAH2 domain 138 210 IPR036600 GO:0006355
Vium14729g00001 1391 Gene3D Paired amphipathic helix 140 212 IPR036600 GO:0006355
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 211 238 - -
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 15 30 - -
Vium14729g00001 1391 Gene3D Paired amphipathic helix 339 412 IPR036600 GO:0006355
Vium14729g00001 1391 FunFam Paired amphipathic helix protein Sin3 63 125 - -
Vium14729g00001 1391 Gene3D Paired amphipathic helix 63 125 IPR036600 GO:0006355
Vium14729g00001 1391 PANTHER SIN3B-RELATED 57 1253 IPR039774 GO:0003714
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 1003 1023 - -
Vium14729g00001 1391 FunFam Paired amphipathic helix protein SIN3 338 412 - -
Vium14729g00001 1391 ProSiteProfiles PAH domain profile. 341 410 IPR003822 GO:0006355
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 246 310 - -
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 752 806 - -
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 1 55 - -
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 431 455 - -
Vium14729g00001 1391 Pfam Paired amphipathic helix repeat 363 407 IPR003822 GO:0006355
Vium14729g00001 1391 Pfam Paired amphipathic helix repeat 80 124 IPR003822 GO:0006355
Vium14729g00001 1391 Pfam Paired amphipathic helix repeat 164 208 IPR003822 GO:0006355
Vium14729g00001 1391 MobiDBLite consensus disorder prediction 934 1075 - -
Vium14729g00001 1391 FunFam Paired amphipathic helix SIN3-like protein 140 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14729g00001 Vium-Chr14729 718 10728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14729g00001 42 160 WRKY Transcription Factor Family AT4G12020 50.000 4.85e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium14729g00001 Sin3a_C 1.7e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14729g00001 K11644 - gmx:100807181 2417.11