Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14716g00009 ATGTTGCTGGAAGTTCAAAGCTGGCCCTACAGTTTCCCTGATTCAGATGATTTTGCGAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTTTGGTCAGAGAGAGGTGTATAAATGATGACTATATCTCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCTCCAGGCGATGTGGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTTTCCATCACCAATGTACGTGCAGGAGATTACAATGTTTACGCCTGGGTGCCTGGTTTTATTGGTGACTATAAATATGACGTAGCTATGACCATAACAGAAGGCTGTGAAATCGACCTTGGTGAGCTTGTGTATGAACCCCCTAGAGATGGTCCAACATTGTGGGAAATTGGCATTCCTGATCGAACAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTTTTTGTTAATCATCCTGACAAGTTTAGACAATATGGATTATGGGAGAGATATGCAGAACTCTACCCTGACAAAGACCTGATCTACACAATTGGTATCAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAACACATTTCAAGGAACCACTTGGCAGATCAAGTTTCAACTTGATCAGGTGAACAAAACCAGTAGCTATAAACTGCGGGTGGCTTTGGCATCTGCAACATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGAGCCCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCAAGGCATGGAATTCATGGACTTTATTGGCTTTACAATGTAGACATTGCAGGAACTCAATTTGTTGAAGGAGATAATACCATCTTTTTGACACAGAGCAGAGGAAATAGTCCATTTCAGGCAATTATGTATGATTATATTCGTCTGGAAGCTCCACCATCGTCTACCTTCAATAACACAAAGTGA 999 0.4204 MLLEVQSWPYSFPDSDDFAKWDERGNVSGRLLVRERCINDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSITNVRAGDYNVYAWVPGFIGDYKYDVAMTITEGCEIDLGELVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLFVNHPDKFRQYGLWERYAELYPDKDLIYTIGISDYTKDWFFAQVTRKKDDNTFQGTTWQIKFQLDQVNKTSSYKLRVALASATLSELQVRVNNPKSPRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIAGTQFVEGDNTIFLTQSRGNSPFQAIMYDYIRLEAPPSSTFNNTK 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14716g00009 332 Pfam Polysaccharide lyase family 4, domain II 46 118 IPR029413 -
Vium14716g00009 332 SUPERFAMILY Galactose-binding domain-like 129 321 IPR008979 -
Vium14716g00009 332 SUPERFAMILY Starch-binding domain-like 66 118 IPR013784 GO:0030246
Vium14716g00009 332 Pfam Polysaccharide lyase family 4, domain III 132 320 IPR029411 -
Vium14716g00009 332 CDD RGL4_M 23 122 IPR029413 -
Vium14716g00009 332 CDD RGL4_C 134 321 - -
Vium14716g00009 332 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 324 - -
Vium14716g00009 332 FunFam Rhamnogalacturonate lyase B 20 119 - -
Vium14716g00009 332 Gene3D - 22 118 - -
Vium14716g00009 332 Gene3D - 130 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14716g00009 Vium-Chr14716 52847 54969 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14716g00009 1 323 Polysaccharide Lyase AT1G09890 69.350 6.78e-174 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14716g00009 K18195 - gmx:100814721 651.358