Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14716g00008 ATGCCGTTATTGGGGGTGCAACTTACTGTTCAAGATAATCATGTGGTGATGGAAAATGGCATACTAAAAGTCACTTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTACAATAACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAACAGAGGCTACTGGGACCTTGTCTGGAGCTCGCCGACAAGCACAGGAACCAGTGGTACATTTGATGTCATCAAAGGAACAAAGTTCCAAGTTATGGTTGAAAATGAGGACCAAGTTGAGGTATCCTTCACCAGGACGTGGGACGTCTCTCTCGAGGGCAAGCTGGTTCCTTTAAACATTGACAAAAGGTTCATAATGCTTCGTGGTTGTTCGGGCTTCTACTCCTATGCAATTTATGAGCACTTACAGGAGTGGCCTGCTTTCAATCTTGACGAAACAAGAATCGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCAATGGCTGACAATAGACAAAGAAACATGCCTCTTCCAGATGACAGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAAGCAGTTCTACTTGTCAATCCCATCGAACCAGAACTTAAGGGAGAGGTGGATGACAAGTACCAATATTCATGCGACAACAAAGACAACAAAGTTCATGGATGGATCTGCATGGATCCTGCAGTGGGATTCTGGCTTATTACGCCAACGGATGAGTTTCGATCTGGTGGGCCCCTCAAACAAAACTTAACTTCTCATGTTGGCCCCACCACGCTTGCCGTGTTTCTGAGTGCACATTACTCTGGAGAGGATTTGGTGCCTAAGTTTAATGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCTGTTTTCATTTATTTGAATTCTTCCTATGATGGAGTTGACCCCCTTAAGCTATGGGACGATGCTAAACTACAGATGTTGCTGGAAGTTCAAAGCTGGCCCTACAGTTTCCCTGATTCAGATGATTTTGCGAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTTTGGTCAGAGAGAGGTGTATAAATGATGACTATATCTCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCTCCAGGCGATGTGGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTTTCCATCACCAATGTACGTGCAGGAGATTACAATGTTTACGCCTGGGTGCCTGGTTTTATTGGTGACTATAAATATGACGTAGCTATGACCATAACAGAAGGCTGTGAAATCGACCTTGGTGAGCTTGTGTATGAACCCCCTAGAGATGGTCCAACATTGTGGGAAATTGGCATTCCTGATCGAACAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTTTTTGTTAATCATCCTGACAAGTTTAGACAATATGGATTATGGGAGAGATATGCAGAACTCTACCCTGACAAAGACCTGATCTACACAATTGGTATCAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGACAACACATTTCAAGGAACCACTTGGCAGATCAAGTTTCAACTTGATCAGGTGAACAAAACCAGTAGCTATAAACTGCGGGTGGCTTTGGCATCTGCAACATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGAGCCCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCAAGGCATGGAATTCATGGACTTTATTGGCTTTACAATGTAGACATTGCAGGAACTCAATTTGTTGAAGGAGATAATACCATCTTTTTGACACAGAGCAGAGGAAATAGTCCATTTCAGGCAATTATGTATGATTATATTCGTCTGGAAGCTCCACCATCGTCTACCTTCAATAACACAAAGTGA 1932 0.4306 MPLLGVQLTVQDNHVVMENGILKVTLSNPGGIVTGIQYNNIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTKFQVMVENEDQVEVSFTRTWDVSLEGKLVPLNIDKRFIMLRGCSGFYSYAIYEHLQEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDNKVHGWICMDPAVGFWLITPTDEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNAGEAWKKVFGPVFIYLNSSYDGVDPLKLWDDAKLQMLLEVQSWPYSFPDSDDFAKWDERGNVSGRLLVRERCINDDYISAKGAYVGLAPPGDVGSWQRECKNYQFWAKADDDGYFSITNVRAGDYNVYAWVPGFIGDYKYDVAMTITEGCEIDLGELVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLFVNHPDKFRQYGLWERYAELYPDKDLIYTIGISDYTKDWFFAQVTRKKDDNTFQGTTWQIKFQLDQVNKTSSYKLRVALASATLSELQVRVNNPKSPRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIAGTQFVEGDNTIFLTQSRGNSPFQAIMYDYIRLEAPPSSTFNNTK 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14716g00008 643 Gene3D - 441 632 - -
Vium14716g00008 643 CDD RGL4_N 8 295 - -
Vium14716g00008 643 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
Vium14716g00008 643 CDD RGL4_C 445 632 - -
Vium14716g00008 643 Pfam Rhamnogalacturonate lyase family 9 203 IPR010325 -
Vium14716g00008 643 FunFam Rhamnogalacturonate lyase B 331 430 - -
Vium14716g00008 643 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Vium14716g00008 643 Gene3D - 5 302 IPR014718 GO:0030246
Vium14716g00008 643 CDD RGL4_M 334 433 IPR029413 -
Vium14716g00008 643 SUPERFAMILY Galactose mutarotase-like 8 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vium14716g00008 643 SUPERFAMILY Starch-binding domain-like 373 429 IPR013784 GO:0030246
Vium14716g00008 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 635 - -
Vium14716g00008 643 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Vium14716g00008 643 Gene3D - 333 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14716g00008 Vium-Chr14716 44123 48277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14716g00008 1 634 Polysaccharide Lyase AT1G09890 70.912 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14716g00008 K18195 - gmx:100814721 1255.35