Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium14716g00001 ATGGTGCTGAGGAAAGTGGGGAAGTATGAGATTGGGAGGACGATTGGGGAGGGAACTTTTGCGAAGGTGAAATTCGCTCAGAACACAGAAACTGGAGAGAGCGTGGCCATGAAAGTGCTCGACCGCAGCACCATCATCAAGCACAAGATGGTCGACCAGATCAAGAGGGAGATTTCCATTATGAAGCTTGTTAGGCATCCTTATGTTGTTCGCCTGTACGAGGTTCTTGCGACCCGTACTAAGATTTACATCATACTGGAGTTCATCACGGGTGGTGAATTGTTCGATAAAATTATACACCATGGTCGTCTTAGTGAAGCTGATTCTAGAAAATATTTTCAACAGCTTATTGATGGTGTAGATTATTGCCACAGTAAGGGAGTTTATCACAGAGATTTAAAGCCTGAAAATCTCTTACTTGATTCTCTGGGAAATATAAAGATTTCCGATTTTGGTTTGAGTGCATTGCCTGAACAGGGAGTGAGTATCCTTCGAACTACTTGTGGGACCCCAAACTATGTAGCTCCTGAGGTACTCAGTCATAAGGGTTACAACGGTGCTGTGGCAGATGTTTGGTCCTGTGGGGTTATCCTCTATGTCCTACTGGCTGGATATCTTCCCTTTGATGAGCTTGATCTAACCACCTTATATAGTAAGATTGAGAGAGCAGAATTTTCATGCCCTCCATGGTTTCCTGTGGGAGCAAAAATCTTGATAAATAGAATTTTGGACCCAAATCCTGAAACCCGTATAACCATTGAACAGATAAGAAATGATGAATGGTTTCAGAGGAGCTACGTTCCTGTCAGTCTTCTTGAGTATGAAGATGTAAATCTTGATGATATAAATGCTGCTTTTGATGAAACCGAGAGGGCTGATCAACAATGTGATAACGAGGACATGGGTCCCTTAATTCTTAATGCATTTGATTTGATAATTCTCTCTCAAGGTTTAAATCTTGGAACAATCTTTGATCGTGGACAGGACTCTGTAAAGTACCAAACCCGCTTTGTCACTCAAAAGCCAGCAAAGGTGGTTTTATCAAGTATGGAAGTCGTGGCACAATCAATGGGATTTAAAACACATATTCGCAACTACAAGATGAGGGTAGAGGGTGTTTCAGCAAATAAAACATCGTATTTTTCGGTCATCATGGAAATTTTCGAAGTGGCTCCCACATTTTACATGGTGGACATTCAGAAAGCAGCTGGAGATACTGGTGAATACCTCAAGTTTTATAAGAACTTTTGTAGCAATCTTGAGGATATAATCTGGAAACCCCCTCATGAAGCAACCAAATCAAGGATCTCCAAGACCAAAAGCAAAAGGCGATAG 1335 0.4157 MVLRKVGKYEIGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKREISIMKLVRHPYVVRLYEVLATRTKIYIILEFITGGELFDKIIHHGRLSEADSRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNIKISDFGLSALPEQGVSILRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLLAGYLPFDELDLTTLYSKIERAEFSCPPWFPVGAKILINRILDPNPETRITIEQIRNDEWFQRSYVPVSLLEYEDVNLDDINAAFDETERADQQCDNEDMGPLILNAFDLIILSQGLNLGTIFDRGQDSVKYQTRFVTQKPAKVVLSSMEVVAQSMGFKTHIRNYKMRVEGVSANKTSYFSVIMEIFEVAPTFYMVDIQKAAGDTGEYLKFYKNFCSNLEDIIWKPPHEATKSRISKTKSKRR 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium14716g00001 444 SUPERFAMILY Protein kinase-like (PK-like) 6 290 IPR011009 -
Vium14716g00001 444 FunFam Non-specific serine/threonine protein kinase 300 426 - -
Vium14716g00001 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vium14716g00001 444 FunFam Non-specific serine/threonine protein kinase 2 301 - -
Vium14716g00001 444 Gene3D Kinase associated domain 1, KA1 305 426 - -
Vium14716g00001 444 Pfam NAF domain 303 361 IPR004041 GO:0007165
Vium14716g00001 444 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14716g00001 444 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524
Vium14716g00001 444 CDD CIPK_C 307 422 - -
Vium14716g00001 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 411 - -
Vium14716g00001 444 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Vium14716g00001 444 Gene3D Transferase(Phosphotransferase) domain 1 3 304 - -
Vium14716g00001 444 ProSiteProfiles NAF domain profile. 301 325 IPR018451 GO:0007165
Vium14716g00001 444 SMART serkin_6 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium14716g00001 444 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium14716g00001 Vium-Chr14716 6403 12567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium14716g00001 1 386 CBL-interacting serine-threonine protein kinases AT4G24400 82.171 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vium14716g00001 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium14716g00001 - - gmx:100785444 835.484